FC929083

Overview
NameFC929083
Unique NameFC929083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 58/140 (41.43%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKG-----IGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKK-HTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQV--VEGMDVVKAI 794
            G I + L  +  P+T  NF  L TG++       G+      Y G+ FHRVI GFM Q                G +FADE   +   T P +L+MANAGPGTNGSQFF+  + T WL GKH +FG+V    G  VV AI
Sbjct:   14 GDIEIRLLPNHAPKTVRNFVELATGQREWVNPETGEKSTDRLYDGTVFHRVISGFMIQGGDPLGNGTGGP----GYKFADEFHPELGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAI 149          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 53/134 (39.55%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            G I ++L+ +  P+  +NF      E G        +Y  + FHR+I  FM Q            ESI+  +F DE     KH  P  +SMAN+GP TNGSQFF+ T  T WLDGKH +F +   G+DVV  IE
Sbjct:  464 GDISIKLYPEEAPKAVQNFTT--HAENG--------YYDNTIFHRIIKNFMIQGGDPLGDGTGG-ESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIE 586          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPIL3_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neurospora crassa GN=cyp-10 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.777e-17
Identity = 54/128 (42.19%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXX----ESIYGSEFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVV 767
            G + +E+F +  P+TAENF ALC        SG   +Y  S FHR+IP FM Q                 SIYG  F DE   V +H   GI+SMAN GP TNGSQFF+       LDG + VFG+++
Sbjct:   10 GDLKIEIFCESVPKTAENFLALCA-------SG---YYNASPFHRMIPSFMVQTGAPANPSPPENPKGGRSIYGPTFEDEIRPVLRHNERGIVSMANKGPNTNGSQFFILFDKAPHLDGLNTVFGKLI 127          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPI1_STAS1 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1821 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 60/160 (37.50%), Postives = 72/160 (45.00%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVC----------------------------TANTEWLDGKHVVFGQVVEGMDVVKAI 794
            G +  +L  DV P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE   +     G LSMANAGP TNGSQFF+                             T  T WLD KH VFGQ++EG D ++ I
Sbjct:   25 GDMTFKLLPDVAPKTVENFVTHA-------KNG---YYNGVTFHRVINDFMVQGGDPTATGMGG-ESIYGEPFEDEFSKEAFNIYGALSMANAGPHTNGSQFFIVQMNEVPESMLSQLADGGWPEPIVKAYAETGGTPWLDQKHTVFGQLIEGKDTLEDI 173          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPI1_STAES (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0648 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 59/160 (36.88%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVC----------------------------TANTEWLDGKHVVFGQVVEGMDVVKAI 794
            G +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+                                T WLD KH VFGQ++EG   ++ I
Sbjct:   25 GDMTFKLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMKEVPENMLSQLADGGWPQPIVEAYGEKGGTPWLDQKHTVFGQLIEGESTLEDI 173          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPI1_STAEQ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0540 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 59/160 (36.88%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVC----------------------------TANTEWLDGKHVVFGQVVEGMDVVKAI 794
            G +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+                                T WLD KH VFGQ++EG   ++ I
Sbjct:   25 GDMTFKLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMKEVPENMLSQLADGGWPQPIVEAYGEKGGTPWLDQKHTVFGQLIEGESTLEDI 173          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 57/134 (42.54%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            G I +ELF+D  P+T  NF  L        K+G   +Y    FHR I  FM Q            ESI+   F DE     KH   G+LSMAN G  TNGSQFF+  A    LDG H VFG+VV G+DV+  +E
Sbjct:  295 GNINVELFSDKKPKTCHNFIELA-------KTG---YYNDVIFHRNIKKFMIQGGDPTGTGKGG-ESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLE 417          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            G I +E+F D  P  +ENF ALC             +Y  + FHR I GFM Q            ESI+  +F DE F    KH   GILSMAN+GP TNGSQFF+       L+  + VFG+++ G++V+  +E
Sbjct:   10 GDIKVEIFCDSVPLASENFLALCASN----------YYNNTIFHRNIKGFMIQGGDPTNTGRGG-ESIWKKQFKDE-FPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLME 132          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: PPI1_STAHJ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1997 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 58/153 (37.91%), Postives = 69/153 (45.10%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVC----------------------------TANTEWLDGKHVVFGQVVEG 773
            G +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  ++     G LSMANAGP TNGSQFFV                                T WLD KH VFGQ++EG
Sbjct:   25 GDMTFKLFPDIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGSFEDEFSLEAFNLYGALSMANAGPNTNGSQFFVVQMKEVPESMVNQLVDGGWPEPIAKAYADNGGTPWLDQKHTVFGQLIEG 166          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 51/135 (37.78%), Postives = 69/135 (51.11%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            G + +ELFA   P+  ENF   C+            +Y  + FHR+I  FM Q            ESI+   F+DE F+    H   G+LSMAN G  TNGSQFF+     ++LD KH +FG++V G D +  IE
Sbjct:  289 GPLNLELFAPKVPKACENFITHCSNG----------YYNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIE 411          
The following BLAST results are available for this feature:
BLAST of FC929083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIB_STRCH5.732e-1741.43Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
CYP9_SCHPO5.732e-1739.55Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPIL3_NEUCR9.777e-1742.19Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neur... [more]
PPI1_STAS13.715e-1637.50Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAES3.715e-1636.88Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAEQ3.715e-1636.88Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPIL2_RHIOR6.337e-1642.54Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPIL3_DICDI8.276e-1639.26Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPI1_STAHJ8.276e-1637.91Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CYP4_CAEEL8.276e-1637.78Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CB12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929083 ID=FC929083; Name=FC929083; organism=Citrus clementina; type=EST; length=798bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCAGAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAACACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGA
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