FC929094

Overview
NameFC929094
Unique NameFC929094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEETLL 332
            AD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTV   + F    +G      EA   +D       +   L TY    ++   +   GMAQDLSW   A+ +E+ L+
Sbjct:  583 ADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMID------ALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLV 688          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_PROMA (Glycogen synthase OS=Prochlorococcus marinus GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 53/142 (37.32%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG++PIV + GGLVDTV       +  TGF    F       +P+D    +  VR   A    ++  E+ K  M Q  SW+  A ++E   +  EV+G  EP  D  E+   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSIPIVRNVGGLVDTVIPHDPINKSGTGFCFDRF-------EPIDF--YTALVRSWEAFRHRRSWKELQKRAMTQMYSWERSAMEYE--TMYKEVSGYKEPSPDAIEVEKFSVGQDADP 478          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_NOVAD (Glycogen synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            D IL+PSRFEPCGL QL+ + YG VP+VA TGGL DTV +      M   +   +  + V+  +VS  + RA+  Y        M + GM  D SW    K + +
Sbjct:  372 DAILVPSRFEPCGLTQLYGLAYGCVPVVARTGGLADTVIDANLAAVMAGVATGVQ-FEGVNYPSVSDAISRAVTLYRQPDVWRAMQRAGMKTDFSWSRSGKAYAD 475          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_NITEU (Glycogen synthase OS=Nitrosomonas europaea GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE---------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL-ATYGTQALAEMMKNGMAQDLSWKGPA 308
            AD  L+PSRFEPCGL Q+++ RYGT PIV +TGGL+DTV          E  +GF     + D          A    + RA+ A Y T+    +  NGM +D SW+  A
Sbjct:  383 ADCFLMPSRFEPCGLNQMYSQRYGTPPIVHTTGGLIDTVTDLAPDTPAGESASGFHFHEMTAD----------AFMNGIGRAIDAYYNTRLWKTLQHNGMRKDFSWRSSA 482          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PS +EPCGL Q+ A+RYG VP+V  TGGL DTV +     Q G+   +  + +     A+  TV R+L  +  + A  ++MK GM+ D SW   A+++EE
Sbjct:  372 SDIFLMPSHYEPCGLGQMIALRYGAVPLVRKTGGLADTVFDE----QDGATEPNGFSFEDYTPEALWETVSRSLQAFDDKGAWKKLMKRGMSCDYSWDASARRYEE 473          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE--------------MMKNGMAQDLSWKGPAKKWEETLL 332
            AD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV                +  DP + + +  T  RA A+    AL                +    M QDLSW   A+ +EE L+
Sbjct:  656 ADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTV----------------QPFDPFNESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLI 761          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SHIFL (Glycogen synthase OS=Shigella flexneri GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SHIF8 (Glycogen synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SHIDS (Glycogen synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SHIBS (Glycogen synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRASLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
The following BLAST results are available for this feature:
BLAST of FC929094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
SSY22_ORYSJ9.175e-1341.96Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_PROMA9.175e-1337.32Glycogen synthase OS=Prochlorococcus marinus GN=gl... [more]
GLGA_NOVAD9.175e-1339.05Glycogen synthase OS=Novosphingobium aromaticivora... [more]
GLGA_NITEU9.175e-1340.00Glycogen synthase OS=Nitrosomonas europaea GN=glgA... [more]
GLGA_GEOUR9.175e-1339.62Glycogen synthase OS=Geobacter uraniireducens (str... [more]
SSY2_SOLTU1.198e-1236.89Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_SHIFL1.198e-1238.46Glycogen synthase OS=Shigella flexneri GN=glgA PE=... [more]
GLGA_SHIF81.198e-1238.46Glycogen synthase OS=Shigella flexneri serotype 5b... [more]
GLGA_SHIDS1.198e-1238.46Glycogen synthase OS=Shigella dysenteriae serotype... [more]
GLGA_SHIBS1.198e-1238.46Glycogen synthase OS=Shigella boydii serotype 4 (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DF12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929094 ID=FC929094; Name=FC929094; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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