FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   37 TSSSAPSRKALSKIASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSM 402
            T+SS  ++ ++S  +  R+Q+E+ E  ++PP    AG K    DNL  WI  + G  GT Y    F L + FP  YP + P+++F      H ++ + G + ++IL DSWSPA+T++ V  +I S+
Sbjct:   24 TASSWVAKTSVSA-SGKRIQREMAELNIDPPPDCSAGPKG---DNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVF-KTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSI 144          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            A  RL  +    Q +PP G      DN +  W   + G   T +   TF+L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V++V  SI S+L
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLL 113          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 43/140 (30.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   70 SKIASNRLQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKQRPADND 444
            S  +   L+K+L E Q NPP GF   + D+  +  W + + G   TLY    F   + FP+ YP+  P++ F      HP+++ NG +C+ IL+             + W P  +  ++ IS++SMLSS    + PA+ D
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEI-WHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPN-DESPANID 140          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++      + P G       DN+  W   + G P T + + +F L + F + YP + P V F+     HP+IY+NG +CLDIL + WSP   V+++  S+ S+L+
Sbjct:    1 MSTAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKM-FHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            LQK+L +   +P  GF   + D  N+  W + + G P TLY    F   + FP++YP   P V F      HP++Y +G +C+ IL+             + W+P  TV S+ +SI+SMLS
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDI-WHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLS 128          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
COP10_ARATH3.072e-1234.92Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC3_ARATH4.012e-1238.18Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC15_SCHPO4.012e-1230.71Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC2_CRYNE5.240e-1233.04Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC13_ARATH5.240e-1233.88Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2N_RAT6.844e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB6.844e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.844e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN6.844e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN6.844e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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