FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--------SWSPAMTVSSVCISILSMLSSSTVKQRPADND 444
            + S  L  E      NP   FK  V +N +  W + + G   TLY    F+ ++ FP +YP E P++ F      HP+IYS+G +C+ IL+         +WSP   + ++ +S++S+L+       PA+ D
Sbjct:    1 MVSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEM-WHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNT-DSPANVD 130          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G     + DN++ + + + G   + Y    F+L++  PE YPM AP+V FL     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 1
Query:  151 TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            ++N+  W   + G  GT Y    F L + FP  YP + P+  F  P   HP+I   G IC++IL D W+PA+ V  V +SIL +L
Sbjct:   33 SNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPI-YHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLL 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            N+ +W   + G   T Y    F+L    PE YP++ PQV FL     HP++ +  G ICLDIL ++WSPA T+ SVC +I+++++
Sbjct:   33 NIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKI-FHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            S RLQ+EL    ++   G       DNL +W+  ++G   T+Y +  ++L ++FP  YP + P V F  P   HP++  +G+ICLDIL ++W+ +  V ++ +S+ S+L
Sbjct:   32 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC-WHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLL 139          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 42/137 (30.66%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   43 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL------------DILYDSWSPAMTVSSVCISILSMLSS 411
            ++AP+R+A S  +S+ + +        P  GF+    D  N+  W + + G P TLY    F   + FP++YP   P V F      HP++Y +G +C+            ++  + W+P  TV S+ +SI+SMLSS
Sbjct:    2 ATAPARRASSSRSSSEISR------TTPSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEM-WHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSS 131          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  121 NPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--------SWSPAMTVSSVCISILSMLS 408
            NP   FK  V +N +  W + + G P TLY    F+ +V FP  YP   P++ F      HP+IY +G +C+ IL+         +WSPA  + ++ +S++S+L+
Sbjct:   16 NPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEM-WHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLN 119          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL----YDSWSPAMTVSSVCISILSMLS 408
            ++RL+KEL    + PP G    +  D +     ++ G   T Y    F L+V  PE YP E PQV FL P   HP+I S+G ICLDIL      +W P++ +++V  SI  +++
Sbjct:    4 ASRLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPI-YHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMA 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  121 NPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--------SWSPAMTVSSVCISILSMLS 408
            NP   FK  V +N +  W + + G P TLY    F+ +V FP  YP   P++ F      HP+IY +G +C+ IL+         +WSPA  + ++ +S++S+L+
Sbjct:   16 NPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEM-WHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLN 119          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 40/142 (28.17%), Postives = 73/142 (51.41%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKV------TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDS--WSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA+ RL +E   W+ + P GF  K       T NL  W   + G   T++    + +++ F + +P   P+  F PP   HP++Y +G +CL +L ++  W P++++  + I I  +L+   ++  PA  + Y   C+N
Sbjct:    1 MSGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPL-FHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIED-PAQAEAYQIYCQN 140          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC_ASFP46.844e-1230.30Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC35_ARATH6.844e-1237.61Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC31_ARATH6.844e-1238.82Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC21_ARATH6.844e-1240.00Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2C_SPISO1.167e-1133.94Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC7_WHEAT1.167e-1130.66Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC_ASFB71.525e-1133.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2T_MOUSE1.991e-1136.84Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC_ASFWA1.991e-1133.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_CAEEL1.991e-1128.17SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
back to top