FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G     ++ N++ + + + G   + Y    F+L++  PE YPM AP+V FL     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    9 RIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G      TDN + + + ++G   + +    F L++   + YPM AP+V FL     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 43/142 (30.28%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P G     T N      L      + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C++
Sbjct:    1 MSGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIFCQD 140          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD-------------SWSPAMTVSSVCISILSMLSSSTVKQRPADND 444
            L+K+L + +  P  GF   + D+  + +W + V G P TLY    F+  +DFP  YP + P++ F+     HP+I   G++C+ IL+D              W P  TV ++ +S++SML+     + PA+ D
Sbjct:    8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEI-WHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNF-ESPANVD 138          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFKH--KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            + RL+ EL+   ++   G         NL  W   + G   T Y    F++ + FP +YP   P +IF  P   HP++  +G+ICLDIL D WS    V ++ +S+ S+L
Sbjct:   30 TKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPM-WHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLL 138          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            A  RLQKE+ +    PP+    H V DNLQ+W   V G  G+ +    F + +D P  YP + P + F      HP+I  S+G IC ++ + +WSP + +  V  +I S+L+
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKI-YHPNIKTSDGAICAEV-FSTWSPQLKILDVLTTIRSILT 112          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            + RLQ EL++   +         V DN L  W+  + G   T Y+   F++ + FP++YP   P + FL P   HP++  +G+ICLDIL + WS    V ++ +S+ S+L
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPM-WHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLL 118          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 38/121 (31.40%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L  EL   Q  P  GF+  + D  +L  W + + G P TLY    F+  + FP  YP   P   FL     HP+IY NG +C+ IL+             + W+P   V ++ +S++S+L+
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM-WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 132          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 38/121 (31.40%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L  EL   Q  P  GF+  + D  +L  W + + G P TLY    F+  + FP  YP   P   FL     HP+IY NG +C+ IL+             + W+P   V ++ +S++S+L+
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM-WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 132          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 38/121 (31.40%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L  EL   Q  P  GF+  + D  +L  W + + G P TLY    F+  + FP  YP   P   FL     HP+IY NG +C+ IL+             + W+P   V ++ +S++S+L+
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM-WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 132          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC36_ARATH1.991e-1136.70Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_DICDI2.601e-1135.78Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC9_PAGMA2.601e-1130.28SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC7_CAEEL3.397e-1130.83Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC11_SCHPO3.397e-1132.73Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBCB_DICDI4.436e-1134.82Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC11_YEAST5.794e-1133.64Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2R2_RABIT5.794e-1131.40Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE5.794e-1131.40Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN5.794e-1131.40Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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