FC929120

Overview
NameFC929120
Unique NameFC929120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            EI  VLEG L VGF+T+    N L  K +  G+VFVFP+GL+HFQ N G   AA  +A NSQ  G   IA T+F A P +  D L KAF++D   V  ++ KF
Sbjct:  116 EIIFVLEGVLEVGFITTA---NKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKF 215          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            E+  VLEG L VGF+T+    N L AK + KG+VFVFP+GLIH+Q N  K   A+  SA NSQ PG  +IA T+F A P+I    L   FQ+  K ++ +++KF
Sbjct:  115 EVIFVLEGELDVGFITTA---NKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKF 215          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 345
            EI +V++G L VG + S    N L ++V+  G+ F+ P+GL+HFQFN+GKT A+     NSQ P  V +  T+FG+NP I    L KA +++  +V+ L++KF  G+
Sbjct:  118 EIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAGGS 224          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            E+  V+ G + VGFV++        +KV+ +G+ F  P+GL+HFQ+N G  +A A +  NSQ PG V  A  +FGA+P I    L K+FQ+D +I+K L++KF
Sbjct:  132 ELVHVITGRMLVGFVSTA---GKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            E  LVL G +Y GFV S      L AKVL +G+V VFP+ ++HFQ N+G T A  Y A NS+ PG V I  TVFG+   I    L +AF L P  ++ L+ +F
Sbjct:  122 ETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTPAELRRLEKRF 219          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            E  +V+EG++ VGF+T+   N TL +KV+  GD+FV P GLIH++ N+GKT     + +    P EV +  T+    P+I  + L  AF+ D K +  L++KF
Sbjct:  126 EAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 333
            E+  +++G +Y GFV S   NN + AKV+ +G++ V+P+GL+HFQ N+G   A     LNSQ PG   I   VFG+   IN + L KAF L  K +  L+ +F
Sbjct:  122 EVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLKKRF 219          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 336
            E  +VL G +Y GFVTS   ++ ++AKVL +GDVF  PQGL+HF  N G   AA Y++L+SQ PG V +AD +  A   +  D + K    D   V  ++  FI
Sbjct:  126 ETAVVLAGAVYFGFVTSYP-DSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRANFI 226          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFG 249
            E+  VLEGTL VGF+T+    N LI++ L KGDVF FP+GL+HFQ N G   A+  +A NSQ PG  ++  T+FG
Sbjct:  116 EVVFVLEGTLDVGFLTTA---NKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFG 187          
BLAST of FC929120 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD-PKIVK 315
            E+ LV++G L VGF+ +    N L  + L  GD+FVFP+G++HFQFN G   A A SA  S  PG V +  TVFG    I+   L K+F+ D P I+K
Sbjct:  111 ELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFKTDVPTILK 203          
The following BLAST results are available for this feature:
BLAST of FC929120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
GL11_ORYSJ3.377e-1747.57Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH4.411e-1747.12Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GER3_WHEAT4.411e-1741.12Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL37_ORYSJ2.859e-1641.75Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL24_ORYSJ1.086e-1545.63Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH1.569e-1438.83Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL32_ARATH2.049e-1441.75Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL51_ORYSJ1.017e-1342.31Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH1.328e-1352.00Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL92_ORYSJ3.864e-1344.90Putative germin-like protein 9-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CD05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929120 ID=FC929120; Name=FC929120; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTAATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAAGATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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