FC929138

Overview
NameFC929138
Unique NameFC929138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_RAT (Hepatocyte growth factor receptor OS=Rattus norvegicus GN=Met PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQ-AKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    +   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDSDGKKIHCAVKSLNRITDIEEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYL---VSKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: LYN_HUMAN (Tyrosine-protein kinase Lyn OS=Homo sapiens GN=LYN PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKKP 659
            +G G FG V+     +   VAVK L    T   + F  E   +  ++H  LV L    +  E   ++ EYM  GSL  +L++  G   +L   K    +   A G+A++      + IHRD++A+N+L++E    K+ADFGLAR+I   E            +  PE    G  T + DV+SFG++L E+VT GK P
Sbjct:  253 LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIP 443          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: LCK_CHICK (Proto-oncogene tyrosine-protein kinase LCK OS=Gallus gallus GN=LCK PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 73/213 (34.27%), Postives = 106/213 (49.77%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKKP----TGPE-FKDIEGG 692
            +G G FG V+         VA+K L Q  +     F AE   +  ++H  LV L    +  E   ++ EYM  GSL  +L+   G    L  +K   +A   A G+AF+      + IHRD++A+NIL++E    K+ADFGLARLI   E            +  PE    G  T + DV+SFG++L E+VT G+ P    T PE  +++E G
Sbjct:  250 LGAGQFGEVWMGFYNGHTKVAIKNLKQG-SMSPSAFLAEANLMKNLQHPRLVRLYAVVT-KEPIYIITEYMEKGSLVDFLKTSEGIK--LSINKLLDMAAQIAEGMAFIE---AKNYIHRDLRAANILVSEALCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERG 455          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: EPHB2_MOUSE (Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 68/208 (32.69%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKKP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F +E   +G+  H N++ L G  +     +++ E+M NGSLD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE  Q  + T+  DV+S+G+++ E+++ G++P
Sbjct:  634 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED-DTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 834          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: EPHB2_HUMAN (Ephrin type-B receptor 2 OS=Homo sapiens GN=EPHB2 PE=1 SV=5)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 68/208 (32.69%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKKP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F +E   +G+  H N++ L G  +     +++ E+M NGSLD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE  Q  + T+  DV+S+G+++ E+++ G++P
Sbjct:  626 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED-DTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 826          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CDC15_YEAST (Cell division control protein 15 OS=Saccharomyces cerevisiae GN=CDC15 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 62/199 (31.16%), Postives = 104/199 (52.26%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPD-GKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLD-LWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKP 659
            +IG G +G VYKA      + VA+K++     +   +  AE+  L  + H N+V   G+     E  ++ EY  NGSL  L  R+ TG  E    ++          GL +LH      +IHRDIKA+NILL+ +   K+ADFG++ ++++     +  +AGT  ++ PE   +  ++T  D++S G  ++E++T   P
Sbjct:   30 VIGRGSYGVVYKAINKHTDQVVAIKEVVYENDEELNDIMAEISLLKNLNHNNIVKYHGFIRKSYELYILLEYCANGSLRRLISRSSTGLSE----NESKTYVTQTLLGLKYLHG---EGVIHRDIKAANILLSADNTVKLADFGVSTIVNSS----ALTLAGTLNWMAPEILGNRGASTLSDIWSLGATVVEMLTKNPP 217          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 61/199 (30.65%), Postives = 103/199 (51.76%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYC--SFGEEKLLVYEYMVNGSLDLWLRNRT-GSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNE-EFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGR--STTRGDVYSFGVILLELVT 647
            ++G    GT+YKA L +G  + VK L     +  ++F  E + +G +KH N+VPL  Y      +E+LL+ +Y+   SL + L   T      + + +R K+A   A+ L +LH    P   H ++K +NI+L+  +   ++ D+ + RL++              GY  PE   + +   T + DVY+FGVIL+EL+T
Sbjct:  773 VLGRSSHGTLYKATLDNGHMLTVKWLRVGLVRHKKDFAREAKKIGSLKHPNIVPLRAYYWGPREQERLLLSDYLRGESLAMHLYETTPRRYSPMSFSQRLKVAVEVAQCLLYLHDRAMP---HGNLKPTNIILSSPDNTVRITDYCVHRLMTPSGVAEQILNMSALGYSAPELSSASKPIPTLKSDVYAFGVILMELLT 968          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_SHEEP (Hepatocyte growth factor receptor OS=Ovis aries GN=MET PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_PIG (Hepatocyte growth factor receptor OS=Sus scrofa GN=MET PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_MUNMU (Hepatocyte growth factor receptor OS=Muntiacus muntjak GN=MET PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
The following BLAST results are available for this feature:
BLAST of FC929138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_RAT4.182e-1834.27Hepatocyte growth factor receptor OS=Rattus norveg... [more]
LYN_HUMAN4.182e-1832.99Tyrosine-protein kinase Lyn OS=Homo sapiens GN=LYN... [more]
LCK_CHICK4.182e-1834.27Proto-oncogene tyrosine-protein kinase LCK OS=Gall... [more]
EPHB2_MOUSE4.182e-1832.69Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 ... [more]
EPHB2_HUMAN4.182e-1832.69Ephrin type-B receptor 2 OS=Homo sapiens GN=EPHB2 ... [more]
CDC15_YEAST4.182e-1831.16Cell division control protein 15 OS=Saccharomyces ... [more]
Y5020_ARATH5.462e-1830.65Probable inactive receptor kinase At5g10020 OS=Ara... [more]
MET_SHEEP5.462e-1833.80Hepatocyte growth factor receptor OS=Ovis aries GN... [more]
MET_PIG5.462e-1833.80Hepatocyte growth factor receptor OS=Sus scrofa GN... [more]
MET_MUNMU5.462e-1833.80Hepatocyte growth factor receptor OS=Muntiacus mun... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929138 ID=FC929138; Name=FC929138; organism=Citrus clementina; type=EST; length=702bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAAAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CG
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