FC929138

Overview
NameFC929138
Unique NameFC929138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15034 contig Ccv1_Contig15034:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_BOVIN (Hepatocyte growth factor receptor OS=Bos taurus GN=MET PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: EPHA3_HUMAN (Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 70/217 (32.26%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   36 LEATNNFCKTNIIGDGGFGTVY--KAALPDGK--TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHH-GFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAG--TFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKKP 659
            L+ATN      ++G G FG V   +  LP  K  +VA+K L    T+  R +F  E   +G+  H N++ L G  +  +  ++V EYM NGSLD +LR       V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R++        T   G     +  PE     + T+  DV+S+G++L E+++ G++P
Sbjct:  616 LDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI---QLVGMLRGIASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP 824          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_RHIFE (Hepatocyte growth factor receptor OS=Rhinolophus ferrumequinum GN=MET PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 72/213 (33.80%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDENFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_MOUSE (Hepatocyte growth factor receptor OS=Mus musculus GN=Met PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQ-AKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    +   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1081 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIEEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1284          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: MET_LOXAF (Hepatocyte growth factor receptor OS=Loxodonta africana GN=MET PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNGDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: M313A_XENLA (Mitogen-activated protein kinase kinase kinase 13-A OS=Xenopus laevis GN=map3k13-A PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 63/212 (29.72%), Postives = 109/212 (51.42%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLR--NRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPEFKDIEGGNLV 701
            +G G  G V+      G+ VA+KK+ + K         +++ L K+KH N++   G C+      L+ EY  +G L   LR   +     ++ W        G A G+ +LH      IIHRD+K+ N+L+      K++DFG ++ +S   T +S   AGT  ++ PE  ++   + + D++SFGV+L EL+TG+ P    +KD++   ++
Sbjct:  175 LGSGAQGAVFLGKFR-GEEVAIKKVREQKE-------TDIKHLRKLKHPNIIAFKGVCTQAPCYCLIMEYCAHGQLYEVLRAGRKVSPRLLVDWSN------GIASGMNYLH---LHKIIHRDLKSPNVLVTHTDTVKISDFGTSKELSDKSTKMS--FAGTVAWMAPEVIRNEPVSEKVDIWSFGVLLWELLTGEIP----YKDVDSSAII 363          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: EPHA5_MOUSE (Ephrin type-A receptor 5 OS=Mus musculus GN=Epha5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 67/206 (32.52%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHH-GFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAG--TFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKKP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F  E   +G+  H N++ L G  +  +  ++V EYM NGSLD +L+   G   V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R++        T   G     +  PE     + T+  DV+S+G+++ E+V+ G++P
Sbjct:  519 VIGAGEFGEVCSGCLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVI---QLVGMLRGIAAGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERP 717          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: EPB1A_XENLA (Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ephb1-A PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 64/208 (30.77%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGK--TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQS-----GRSTTRGDVYSFGVILLELVT-GKKP 659
            +IG G FG VYK  L  P  +  +VA+K L    ++  R +F +E   +G+  H N++ L G  +     +++ E+M NG+LD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP  +         + T+  DV+S+G+++ E+++ G++P
Sbjct:  625 VIGAGEFGEVYKGRLKLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQD-DTSDPTYTSSLGGKIPVRWTAQEAIAYRKFTSASDVWSYGIVMWEVMSYGERP 825          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: BTKL_DROME (Tyrosine-protein kinase Btk29A OS=Drosophila melanogaster GN=Btk29A PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 64/199 (32.16%), Postives = 98/199 (49.25%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKKPTG 665
            +G G FG V +         AVK + +  T    +F  E + + K++H NLV L G CS      +V EYM +GSL  +LR    +L +        +    ++G+ +L      + IHRD+ A N L+  E   KVADFGLAR +   +   S        + PPE     R +++ DV+++GV++ E+ T GK P G
Sbjct:  532 LGSGQFGVVRRGKWRGSIDTAVKMMKEG-TMSEDDFIEEAKVMTKLQHPNLVQLYGVCSKHRPIYIVTEYMKHGSLLNYLRRHEKTL-IGNMGLLLDMCIQVSKGMTYLER---HNYIHRDLAARNCLVGSENVVKVADFGLARYVLDDQYTSSGGTKFPIKWAPPEVLNYTRFSSKSDVWAYGVLMWEIFTCGKMPYG 725          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 61/218 (27.98%), Postives = 109/218 (50.00%), Query Frame = 3
Query:    6 PLMRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLH-HGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            PL + +   +  ATN+F   NI+ D     V+K  L +G  VA+K+ +       + F  E + +GK++H+ LV L+GYC  G+++ LV ++M N +L   L  R    + + W  R ++A   A  L + +  GF     + ++ A  +L +E+ +A ++ FGL + I+  +         T G + PE            +Y FG +L+ L++GK+
Sbjct:   34 PLTKFSFSALKTATNHFSPENIVSDQTSDVVFKGRLQNGGFVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQR--KYQTMDWSIRLRVAYFVAEALDYCNTAGFAS---YNNLSAYKVLFDEDGDACLSCFGLMKEINNDQI--------TTGSVNPE----------NVIYRFGTVLVNLLSGKQ 228          
The following BLAST results are available for this feature:
BLAST of FC929138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_BOVIN5.462e-1833.80Hepatocyte growth factor receptor OS=Bos taurus GN... [more]
EPHA3_HUMAN5.462e-1832.26Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 ... [more]
MET_RHIFE7.134e-1833.80Hepatocyte growth factor receptor OS=Rhinolophus f... [more]
MET_MOUSE7.134e-1834.27Hepatocyte growth factor receptor OS=Mus musculus ... [more]
MET_LOXAF7.134e-1833.80Hepatocyte growth factor receptor OS=Loxodonta afr... [more]
M313A_XENLA7.134e-1829.72Mitogen-activated protein kinase kinase kinase 13-... [more]
EPHA5_MOUSE7.134e-1832.52Ephrin type-A receptor 5 OS=Mus musculus GN=Epha5 ... [more]
EPB1A_XENLA7.134e-1830.77Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ep... [more]
BTKL_DROME7.134e-1832.16Tyrosine-protein kinase Btk29A OS=Drosophila melan... [more]
SSP_ARATH9.317e-1827.98Probable inactive receptor-like kinase SSP OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929138 ID=FC929138; Name=FC929138; organism=Citrus clementina; type=EST; length=702bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAAAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CG
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