FC929138

Overview
NameFC929138
Unique NameFC929138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15034 contig Ccv1_Contig15034:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 107/234 (45.73%), Postives = 152/234 (64.96%), Query Frame = 3
Query:   12 MRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKL---------SQAKTQGHRE-FTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE-THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPEFKD 680
            +  T+ H+L+      + N+IG G  G VYKA +P+ + +AVKKL          + K+ G R+ F+AE++TLG ++H+N+V  LG C     +LL+Y+YM NGSL   L  R+G    LGW+ RYKI  GAA+GLA+LHH   P I+HRDIKA+NIL+  +FE  + DFGLA+L+   +    S  IAG++GYI PEYG S + T + DVYS+GV++LE++TGK+P  P   D
Sbjct:  774 LNFTVEHVLKC---LVEGNVIGKGCSGIVYKAEMPNREVIAVKKLWPVTVPNLNEKTKSSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKNTRLLMYDYMSNGSLGSLLHERSGVCS-LGWEVRYKIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDFEPYIGDFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPD 1003          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 107/221 (48.42%), Postives = 144/221 (65.16%), Query Frame = 3
Query:   42 ATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVST-DIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPEFKDIEGGNLV 701
            AT+ F  +N+IG GGFG VY+  L  G  VAVK+LS+   QG  EF  E   + K++H+NLV LLG+C  GEEK+LVYE++ N SLD +L +     E L W +RY I  G ARG+ +LH      IIHRD+KASNILL+ +   K+ADFG+AR+    ++  +T  IAGTFGY+ PEY   G  + + DVYSFGV++LE+++GKK +     D  G NLV
Sbjct:  341 ATDKFSDSNMIGRGGFGEVYRGKLSSGPEVAVKRLSKTSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEKILVYEFVPNKSLDYFLFDPAKQGE-LDWTRRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIADFGMARIFGVDQSQANTRRIAGTFGYMSPEYAMRGHFSMKSDVYSFGVLVLEIISGKKNSSFYNIDDSGSNLV 560          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 104/217 (47.93%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   24 LVH---ILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACET---HVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            LVH   +  AT+NF   N +G GGFG+VYK   P G+ +AVK+LS    QG  EF  E+  L K++H+NLV L+G+C  GEE+LLVYE++ N SLD ++ + T   ++L W  RYK+  G ARGL +LH      IIHRD+KASNILL++E   K+ADFGLA+L  + +T     ++ IAGT+GY+ PEY   G+ + + DV+SFGV+++E++TGK+
Sbjct:  344 LVHFETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFIFD-TEKRQLLDWVVRYKMIGGIARGLLYLHEDSRFRIIHRDLKASNILLDQEMNPKIADFGLAKLFDSGQTMTHRFTSRIAGTYGYMAPEYAMHGQFSVKTDVFSFGVLVIEIITGKR 559          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 107/214 (50.00%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   15 RLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISAC-ETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGK 653
            R+T   IL  TNNF    +IG+GGFG VY   L D + VAVK LS + +QG++EF AE+E L +V H NLV L+GYC       L+YEYM NG L   L  + G   VL W+ R  IA   A GL +LH G  P ++HRD+K+ NILL+E F+AK+ADFGL+R  S   E+HVST + GT GY+ PEY ++ R T + DVYSFG++LLE++T +
Sbjct:  562 RITYSEILLMTNNF--ERVIGEGGFGVVYHGYLNDSEQVAVKVLSPSSSQGYKEFKAEVELLLRVHHINLVSLVGYCDEQAHLALIYEYMANGDLKSHLSGKHGDC-VLKWENRLSIAVETALGLEYLHSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVVGTPGYLDPEYYRTYRLTEKSDVYSFGIVLLEIITNQ 772          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 100/206 (48.54%), Postives = 140/206 (67.96%), Query Frame = 3
Query:   42 ATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQG-HREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            AT+NF + N++G GGFG VYK  LPD   VAVK+L+  ++ G    F  E+E +    H+NL+ L+G+C+   E+LLVY +M N SL   LR       VL W+ R +IA GAARG  +LH    P IIHRD+KA+N+LL+E+FEA V DFGLA+L+    T+V+T + GT G+I PEY  +G+S+ R DV+ +G++LLELVTG++
Sbjct:  286 ATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSLAHRLREIKAGDPVLDWETRKRIALGAARGFEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQR 491          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 108/218 (49.54%), Postives = 140/218 (64.22%), Query Frame = 3
Query:   12 MRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKT--QGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGS-LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            M +++  +   TNNF   NI+G GGFG VYK  L DG  +AVK++       +G  EF +E+  L KV+H++LV LLGYC  G EKLLVYEYM  G+L   L   +   L+ L W +R  +A   ARG+ +LH       IHRD+K SNILL ++  AKVADFGL RL    +  + T IAGTFGY+ PEY  +GR TT+ DVYSFGVIL+EL+TG+K
Sbjct:  574 MLISIQVLRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRK 791          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 103/209 (49.28%), Postives = 142/209 (67.94%), Query Frame = 3
Query:   33 ILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTD-IAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            I  ATN+F ++N IG GGFG VYK    +GK VAVK+LS+   QG  EF  E+  + K++H+NLV LLG+   GEE++LVYEYM N SLD  L + T  ++ L W +RY I  G ARG+ +LH      IIHRD+KASNILL+ +   K+ADFG+AR+    +T  +T  I GT+GY+ PEY   G+ + + DVYSFGV++LE+++G+K
Sbjct:  344 IQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQIQ-LDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRK 551          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 98/219 (44.75%), Postives = 146/219 (66.67%), Query Frame = 3
Query:    9 LMRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLI---SACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKK 656
            L++L    I  ATN+F + N +G+GGFG VYK  L  G+ +AVK+LS    QG  EF  E+  + K++H+NLV LLG+C  GEE++L+YE+  N SLD ++ +    + +L W+ RY+I  G ARGL +LH      I+HRD+KASN+LL++    K+ADFG+A+L       +T  ++ +AGT+GY+ PEY  SG  + + DV+SFGV++LE++ GKK
Sbjct:  329 LLQLDFDTIRLATNDFSRDNQLGEGGFGAVYKGVLDYGEEIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIFDSNRRM-ILDWETRYRIISGVARGLLYLHEDSRFKIVHRDMKASNVLLDDAMNPKIADFGMAKLFDTDQTSQTRFTSKVAGTYGYMAPEYAMSGEFSVKTDVFSFGVLVLEIIKGKK 546          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 107/221 (48.42%), Postives = 144/221 (65.16%), Query Frame = 3
Query:   42 ATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTD-IAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKKPTGPEFKDIEGGNLV 701
            AT+NF + N +G GGFG VYK  LP+   +AVK+LS    QG +EF  E+  + K++H+NLV LLG+C   +E++LVYE++ N SLD +L +     + L W +RY I  G  RGL +LH      IIHRDIKASNILL+ +   K+ADFG+AR     +T   T  + GTFGY+PPEY   G+ +T+ DVYSFGV++LE+V GKK +     D  GGNLV
Sbjct:  335 ATDNFSRNNKLGQGGFGEVYKGMLPNETEIAVKRLSSNSGQGTQEFKNEVVIVAKLQHKNLVRLLGFCIERDEQILVYEFVSNKSLDYFLFDPKMKSQ-LDWKRRYNIIGGVTRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFGMARNFRVDQTEDQTGRVVGTFGYMPPEYVTHGQFSTKSDVYSFGVLILEIVCGKKNSSFFQMDDSGGNLV 554          
BLAST of FC929138 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.424e-50
Identity = 105/215 (48.84%), Postives = 137/215 (63.72%), Query Frame = 3
Query:    6 PLMRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTG 650
            P    TL  I  AT++F  TN IG+GGFG V+K  L DG+ VAVK+LS    QG+REF  E+  +  ++H NLV L G+C    + LL YEYM N SL   L +       + W  R+KI CG A+GLAFLH       +HRDIKA+NILL+++   K++DFGLARL    +TH+ST +AGT GY+ PEY   G  T + DVYSFGV++LE+V G
Sbjct:  665 PSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGRVVAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSSALFSPKHKQIPMDWPTRFKICCGIAKGLAFLHEESPLKFVHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHISTKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAG 879          
The following BLAST results are available for this feature:
BLAST of FC929138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RCH1_ARATH6.393e-5145.73LRR receptor-like serine/threonine-protein kinase ... [more]
CRK35_ARATH6.393e-5148.42Putative cysteine-rich receptor-like protein kinas... [more]
CRK29_ARATH6.393e-5147.93Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
Y5169_ARATH8.349e-5150.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5129_ARATH1.090e-5048.54Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH1.090e-5049.54Probable receptor protein kinase TMK1 OS=Arabidops... [more]
CRK6_ARATH1.090e-5049.28Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK41_ARATH1.090e-5044.75Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
CRK31_ARATH1.090e-5048.42Putative cysteine-rich receptor-like protein kinas... [more]
RKF1_ARATH1.424e-5048.84Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929138 ID=FC929138; Name=FC929138; organism=Citrus clementina; type=EST; length=702bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAAAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CG
back to top