FC929140

Overview
NameFC929140
Unique NameFC929140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8818 contig Ccv1_Contig8818:498..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.948e-78
Identity = 135/185 (72.97%), Postives = 157/185 (84.86%), Query Frame = 3
Query:    9 AEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 563
            AE++KM+SLI+QY L+G+FRWI++QMNR RNGELYRYI DTKG FVQPA YEAFGLTVVE+MTC LPTFATC GGPAEII NG SG+HIDPYH +Q A  LV FFE C  +P++W KIS GGLKRI E+YTWK YS+RLLTL GVY FWKHVS L+R E+RRYLEMFY+LK+R LA S+PLA +E
Sbjct:  620 AEIQKMHSLIEQYDLHGEFRWIAAQMNRARNGELYRYIADTKGVFVQPAFYEAFGLTVVESMTCALPTFATCHGGPAEIIENGVSGFHIDPYHPDQVAATLVSFFETCNTNPNHWVKISEGGLKRIYERYTWKKYSERLLTLAGVYAFWKHVSKLERRETRRYLEMFYSLKFRDLANSIPLATDE 804          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.463e-77
Identity = 132/181 (72.93%), Postives = 159/181 (87.85%), Query Frame = 3
Query:   12 EMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLA 554
            E++KM+ L+ QY LNG+FRWI++Q NR RNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEII +G SG+HIDPYH +QA+E+LVDFF++CK DP++W+K+S GGL+RI E+YTWKIYS+RL+TL GVY FWK+VS L+R E+RRYLEMFY LK+R LA SVP+A
Sbjct:  627 EIEKMHDLMKQYNLNGEFRWITAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIEHGVSGFHIDPYHPDQASELLVDFFQRCKEDPNHWNKVSDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPIA 807          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.603e-76
Identity = 133/185 (71.89%), Postives = 155/185 (83.78%), Query Frame = 3
Query:    9 AEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 563
            AE++KM+ LI +Y L GQFRWI+SQ NRVRNGELYRYICD  G F QPA YEAFGLTVVEAMTCGLPTFATC GGPAEII +G SG+HIDPYH +Q AE + +FF KC+ DP+YW KIS GGL RI+E+YTW+ YS+RL+TL GVYGFWK+VS L+R E+RRYLEMFY LK+R LA SVPLA +E
Sbjct:  569 AEIEKMHRLIQEYNLRGQFRWIASQTNRVRNGELYRYICDKGGIFAQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEDGVSGFHIDPYHADQ-AEKMTEFFVKCREDPNYWTKISAGGLLRIKERYTWQKYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLATDE 752          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SUSY_SACOF (Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 3
Query:   18 KKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKY 524
            KKMYSLID YK  G  R IS+QMNRVRNGELY+YICDTKGAFVQPA YEAF L                   P EII +G SG HIDPYH ++ A+ILV+FF+KC ADPSYWD+IS GG +RI EKYTWK+YS+RL+TLTG YGFW +VS L+R ++ RY++MFYAL+Y
Sbjct:   52 KKMYSLIDDYKFKGHIRLISAQMNRVRNGELYQYICDTKGAFVQPA-YEAFRLDCDRVHEVRSAKDRDLPWRPCEIIADGVSGLHIDPYHSDKDADILVNFFDKCNADPSYWDEISQGG-QRIYEKYTWKLYSERLMTLTGAYGFWNYVSKLERGDT-RYIDMFYALEY 217          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_BETVU (Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LIDQY L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  +  A  L+    K  AD   W K    GLK I   Y+W  +S+  L+
Sbjct:  534 LIDQYDLYGQVAY-PKHHKQADVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIQRVLDNGLLVDPHEQQSIATALL----KLVADKQLWTKCQQNGLKNI-HLYSWPEHSKTYLS 660          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_SPIOL (Sucrose-phosphate synthase OS=Spinacia oleracea GN=SPS1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +II    +G  IDP+  +  A+ L+    K  AD   W K    GLK I   ++W  + +  L+
Sbjct:  544 LIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIIGVLDNGLLIDPHDQKSIADALL----KLVADKHLWTKCRQNGLKNI-HLFSWPEHCKNYLS 670          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_MAIZE (Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 48/133 (36.09%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LID+Y L G   +     N+    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I   Y+W  + +  LT
Sbjct:  549 LIDKYDLYGSVAF-PKHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADALL----KLVADKNLWQECRRNGLRNI-HLYSWPEHCRTYLT 675          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_SOLTU (Sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 3
Query:    3 HEAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTW----KIYSQRL 425
            + A +  +  +ID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP H +QA   + D   K  AD   W K    GLK I   ++W    K Y  R+
Sbjct:  524 NSALLLSILKMIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLVDP-HDQQA---IADALLKLVADKQLWAKCRANGLKNI-HLFSWPEHCKTYLSRI 662          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_ORYSJ (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. japonica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LID+Y L G   +      +    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I + Y+W  + +  LT
Sbjct:  563 LIDKYDLYGSVAF-PKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADALL----KLVADKNLWQECRKNGLRNI-QLYSWPEHCRTYLT 689          
BLAST of FC929140 vs. ExPASy Swiss-Prot
Match: SPS_ORYSI (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. indica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LID+Y L G   +      +    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I + Y+W  + +  LT
Sbjct:  563 LIDKYDLYGSVAF-PKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADALL----KLVADKNLWQECRKNGLRNI-QLYSWPEHCRTYLT 689          
The following BLAST results are available for this feature:
BLAST of FC929140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUS2_ARATH2.948e-7872.97Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUS2_PEA1.463e-7772.93Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUSY_BETVU3.603e-7671.89Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUSY_SACOF1.332e-5463.31Sucrose synthase (Fragment) OS=Saccharum officinar... [more]
SPS_BETVU7.903e-1538.35Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS... [more]
SPS_SPIOL8.737e-1436.84Sucrose-phosphate synthase OS=Spinacia oleracea GN... [more]
SPS_MAIZE1.141e-1336.09Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1... [more]
SPS_SOLTU5.663e-1335.17Sucrose-phosphate synthase OS=Solanum tuberosum GN... [more]
SPS_ORYSJ2.152e-1235.34Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS_ORYSI2.152e-1235.34Probable sucrose-phosphate synthase OS=Oryza sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CE05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929140 ID=FC929140; Name=FC929140; organism=Citrus clementina; type=EST; length=732bp
GGCACGAGGCTGAAATGAAGAAGATGTATTCCCTCATTGATCAATACAAA
TTGAATGGCCAGTTCCGATGGATCTCATCTCAGATGAATCGGGTCAGGAA
CGGTGAATTGTACCGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAAC
CTGCACTGTATGAGGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGT
GGATTGCCAACATTTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGT
TAACGGGAAATCTGGCTACCACATTGATCCTTACCATGGTGAGCAGGCTG
CTGAGATCCTTGTTGACTTCTTTGAGAAGTGCAAGGCAGATCCCTCATAC
TGGGACAAGATATCACTGGGTGGCCTGAAGCGTATTGAAGAGAAGTATAC
ATGGAAAATTTACTCTCAGAGGCTTCTGACCCTGACTGGAGTCTATGGGT
TCTGGAAACATGTATCTAACCTTGATCGTCTTGAGAGCCGTCGATACCTT
GAAATGTTTTATGCTCTCAAGTACCGTAAGCTGGCTGAATCTGTTCCTCT
GGCTGTGGAGGAGTAAATGGACATTGAGGGAAGCTCTCAGGGTGGTTGGT
CCGAGTGGAGGTTTCTTGAGTTGTGGAGAATAATGTCGCTTCCGGGATTG
CGATTGGACAAAGACTTTTTTCCCCCCGTTAAATTTTCTTTTTTCCAATT
TTTTTTTTGCCTTTTTGCATTTCTCAGCATTG
back to top