FC929144

Overview
NameFC929144
Unique NameFC929144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:137..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.831e-86
Identity = 160/251 (63.75%), Postives = 197/251 (78.49%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            P I V VVD++ ++I  WNSD+LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   KIVVEKSTVPVK AE+I  IL     N++ +KFQ+LSNPEFLAEGTA++DL NPDRVLIGG  +PEG +AV  L  +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+CEATGA +S+VA AVG D+ IG KFL ASVGFGGSC
Sbjct:   33 PHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSC 283          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.264e-44
Identity = 104/247 (42.11%), Postives = 150/247 (60.73%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI++++V TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F ++SNPEFL EG+AI D  N +R +IG        KA   +++++  +     ++ TNL SAE+ K AANAFLA +IS +N ++ +CE  GA+VS+VA  VG DS IG KFL A +GFGGSC
Sbjct:   26 KVVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFLREGSAIHDTMNMERAVIGSTS----HKAAAIIEELHQPF--HAPVIKTNLESAEMIKYAANAFLATKISFINDIANICERVGADVSKVADGVGLDSRIGRKFLKAGIGFGGSC 261          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.220e-41
Identity = 96/248 (38.71%), Postives = 154/248 (62.10%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V  +DI  S++ A N  + P+YE GL+G++K+   KNL F+T   K + ++D++F+ V TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K     ++SNPEFL EG A+ D FNP+RV++G  E    +K ++ +++VY ++  ++   + TN  +AEL K A+NAFLA +IS +N ++ L +   A++  +++A+G D  IG KFLNA +G+GGSC
Sbjct:   25 DVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFLREGIAVYDFFNPERVILGF-ENLNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNAFLATKISFINELAKLSDKVKADIKTISYAMGLDPRIGNKFLNAGIGYGGSC 261          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.905e-41
Identity = 100/247 (40.49%), Postives = 151/247 (61.13%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH-WVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V  VD    +I+A    Q+PI+EPGLD +V        L F+ D++  V+ +D+VF++V TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +      ++SNPEFL EG AI+D   PDR++I G +  +G +A + + +VY   ++ +  ++ T   ++EL K A NAFLA +I+ +N ++ LCE  GANV  VA  +G D  IG KFL+A  G+GGSC
Sbjct:   25 DVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFLREGAAIEDFKRPDRIVI-GVDGSDG-RAREVMTEVYRPLYLNQSPLVFTTRRTSELIKYAGNAFLAMKITFINEIADLCEKVGANVQDVARGIGLDGRIGSKFLHAGPGYGGSC 265          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.163e-40
Identity = 97/246 (39.43%), Postives = 148/246 (60.16%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            V  +DI   +I+       PI+EPGL+ ++ K      L F T  EK +++ADI+F++V TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +   + SNPEFL EG+AI D F+ DR++IG  +    +K    L++++  +  +  I  T++ SAE+ K A+NAFLA +IS +N +S +CE  GA++  VA+ +G D  IG +FL A +G+GGSC
Sbjct:   26 VTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIGTAD----EKTANTLEELFRPF--QIPIYQTDIRSAEMIKYASNAFLATKISFINEISNICEKVGADIEAVAYGMGQDKRIGSQFLKAGIGYGGSC 260          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39
Identity = 95/251 (37.85%), Postives = 143/251 (56.97%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V  V+    R+      ++PIYEPGL+ +++ Q     L F+  + + +++A++VF++V TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +  + SNPEFL EG+A+ D   PDRV+IG  ET  G+     L+ +YA ++   +R+L      AE SK AANAFLA +IS +N M+ LC  TG ++  V   +G+D  IG  F+ A  G+GGSC
Sbjct:   25 QVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFLKEGSAVDDFRRPDRVIIGSAETQAGE----TLRQLYAPFLRNHERVLLMGRREAEFSKYAANAFLATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCGYGGSC 266          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.573e-37
Identity = 91/247 (36.84%), Postives = 142/247 (57.49%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN--SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            ++   D  V +I       +P YEPGL   + +C   NL FS++V+  + E  ++F++V TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K L  +  SK + F I+SNPEFL EG A+ D+ +PD+ +IG +E      A+  +K +Y H   +   + T+L  AEL K A N FLA +IS +N M+ +CEA  +++S ++ A+G D  IG  FL A +G+GGSC
Sbjct:   25 DMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFLREGNALYDMLHPDKTVIGVQEEDHVSAAI--VKSIYKHI--DTPFIVTSLAGAELIKYANNFFLAAKISFINEMARICEAYQSDISDISRAIGLDPRIGKHFLQAGIGYGGSC 259          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.872e-36
Identity = 91/246 (36.99%), Postives = 137/246 (55.69%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            V  +D    +I+  N   LPIYE  LD  +KQ    N L F+      +  A+ +F++V TP+K  G      ADL Y   A   +++    D ++V KSTVP  +   I   L   SKG  F + SNPEFL EG+A++D   PDR+++G       +++ + L+ +YA  + +  + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D  IG  FLNA  GFGGSC
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALEANRLKFTNIYNNELQNAEAIFITVGTPSKESG-----EADLKYVYDAIDKVSEHINKDCLIVIKSTVPPDSCSNIIAYL--KSKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEEILRKIYAPLIEQGAKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIEDLSKGVGLDQRIGQNFLNAGPGFGGSC 260          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RICTY (UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN=udg PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 93/242 (38.43%), Postives = 133/242 (54.96%), Query Frame = 2
Query:   35 DISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            D+ +S++N      LPIYE  LD  +KQ      L F+          D VF++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       Q++   L+ +YA  + +  + L TNL ++EL K A+N+FLA +I+ +N M+ LCE  GAN+  ++  VG D  IG  FLNA  GFGGSC
Sbjct:   33 DVKISKLN---KKILPIYEAKLDEYLKQALESDRLKFTNIYSNDFRNVDAVFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNQESEALLRTIYAPLIEQGVKFLVTNLVTSELIKYASNSFLATKIAFINEMADLCEKIGANIKDLSQGVGLDQRIGRNFLNAGPGFGGSC 260          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 93/245 (37.96%), Postives = 135/245 (55.10%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            V  +D    +I+  N   LPIYE  LD  +KQ      L F+      +  AD +F++V TP+K  GLG    ADL Y   A   + +    D ++V KSTVP  +   I   L   S+G  F + SNPEFL EG+A++D   PDR++IG       +++   L+ +YA  +   + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D  IG  FLNA  GFGGSC
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALESDRLKFTNIYNNELQNADAIFITVGTPSK--GLGE---ADLKYVYDAIDKVFEHINKDCLIVIKSTVPPGSCSNIIAYL--KSRGFSFNVASNPEFLREGSAVEDFLYPDRIVIG----VNNKESEAILRKIYAP-LQGVKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIKDLSKGVGLDQRIGQNFLNAGPGFGGSC 258          
The following BLAST results are available for this feature:
BLAST of FC929144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
UGDH_CAEEL1.831e-8663.75UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
TUAD_BACSU2.264e-4442.11UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
Y1054_METJA5.220e-4138.71Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
UDG_RHIME8.905e-4140.49UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
YWQF_BACSU1.163e-4039.43UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
UDG_PSEAE8.335e-3937.85UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
YTCA_BACSU4.573e-3736.84Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
UDG_RICFE3.872e-3636.99UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICTY6.604e-3638.43UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN... [more]
UDG_RICCN9.536e-3537.96UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929144 ID=FC929144; Name=FC929144; organism=Citrus clementina; type=EST; length=755bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAGTCAATA
CCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGAC
TCTANGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTC
CTGCT
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