FC929144

Overview
NameFC929144
Unique NameFC929144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:137..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 89/242 (36.78%), Postives = 131/242 (54.13%), Query Frame = 2
Query:   35 DISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            D+ +S++N      LPIYE  LD  +K       L F+          D +F++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       +++   L+ +YA  + +  + L TNL ++EL K  +N+FLA +I+ +N M+ LCE  GAN+  ++  VG D  IG  FLNA  GFGGSC
Sbjct:   33 DVKISKLN---KKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEALLRKIYAPLIEQGAKFLVTNLVTSELIKYVSNSFLATKIAFINEMADLCEKIGANIKDLSQGVGLDQRIGRNFLNAGPGFGGSC 260          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 88/247 (35.63%), Postives = 136/247 (55.06%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            V  +D   ++I+  N   LPIYE  LD    Q    + L F++   + +   + VF++V TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F + SNPEFL EG A++D   PDR++IG       +++   L+ +Y         ++ T+L +AEL K  +N+FLA +I+ +N M+ LCE  GA++  ++  +G D  IG  FLNA  GFGGSC
Sbjct:   26 VTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG----VNNKESEDILRKIYMPLTDNGAELVITDLVTAELIKYGSNSFLATKIAFINEMANLCEKIGADIKNLSKGIGLDKRIGTAFLNAGPGFGGSC 260          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 72/255 (28.24%), Postives = 123/255 (48.24%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPK--FLNASVGFGGSC 754
            EV  VD+S ++I+  N  + PI EPGL+ +++Q R    L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R     I + S+   +VV  + +P      +  ++   S    G+ F + +NPEFL E TAI+D   P   +IG  +   G      L+++Y     +  I+   +  AE+ K   N + A +++  N +  + +A G +  +V   +  D  +     ++     FGGSC
Sbjct:   25 EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSC 268          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_ECO11 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 74/249 (29.72%), Postives = 116/249 (46.59%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  +++   N  + PI +  ++  +     K L F    +K+ +  D  +V + TPT    KT              ES  R + D++ +  +V+ KST+PV     +++ L     GI   I  +PEFL EG A+ D  +P R++IG R    G+ A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDIVPTKVEMLNQKKSPIVDKEIEEYLAT---KQLNFRATTDKYDAYRDGTYVIIATPTDYDPKTNYFNTSSV------ESVIRDVVDINPNAVMVI-KSTIPVGFTNLLKERL-----GID-NIFFSPEFLREGRALYDNLHPSRIVIGERSERAGRFAALLQEGAVKKDIPT---LFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG8_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=ugd PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 74/247 (29.96%), Postives = 118/247 (47.77%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK--SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  ++++  N  Q PI +  ++  +     K+L F    +K+ +  +  +V + TPT           +     S   VI DV++   + ++V KST+PV   ++I++ L     GI   I S PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDIVQAKVDMLNKKQSPIVDKEIEEYLAT---KDLNFRATTDKYDAYKNADYVIIATPTDYD-----PKTNYFNTSSVEAVIRDVTEINPNAVMVIKSTIPVGFTKSIKERL-----GIDNLIFS-PEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 74/256 (28.91%), Postives = 120/256 (46.88%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSC 754
            EV  VD+S ++I+  N  + PI EPGL+ +++Q      L  +TD  + +  +D+  + V TP+K  G LG      L Y ES  R    V+ D ++   IVV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  ++  G      L+ +Y     +  I+   +  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC
Sbjct:   25 EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLG------LEYIESVCREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASGD----ILQALYEEL--DAPIIRKPIEVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKVLNLSQYYMRPGFAFGGSC 268          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 75/246 (30.49%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV            +    LN   G GG C
Sbjct:   34 EVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRV--NILNPGPGVGGHC 261          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 74/246 (30.08%), Postives = 116/246 (47.15%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I TT+  +AE+ KL  N +    I+  N  + +C+  G NV            +    LN   G GG C
Sbjct:   34 DVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGQIYTTDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRV--NILNPGPGVGGHC 261          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_ECO57 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O157:H7 GN=ugd PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 75/248 (30.24%), Postives = 116/248 (46.77%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVKTAEAI-EKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV   EA+ +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTEAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 75/256 (29.30%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSC 754
            EV  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC
Sbjct:   25 EVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSC 268          
The following BLAST results are available for this feature:
BLAST of FC929144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
UDG_RICPR3.624e-3436.78UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
UDG_RICBR1.166e-3235.63UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
ALGD_PSEAE7.335e-1928.24GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
UDG_ECO112.787e-1829.72UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
UDG8_ECOLX4.755e-1829.96UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
ALGD_PSEPK6.210e-1828.91GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
WECC_METM78.110e-1830.49UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METMP1.059e-1730.08UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
UDG_ECO571.059e-1730.24UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
ALGD_PSESY1.383e-1729.30GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929144 ID=FC929144; Name=FC929144; organism=Citrus clementina; type=EST; length=755bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAGTCAATA
CCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGAC
TCTANGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTC
CTGCT
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