FC929144

Overview
NameFC929144
Unique NameFC929144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_SHIFL (Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 75/248 (30.24%), Postives = 115/248 (46.37%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_ECOLI (UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 75/248 (30.24%), Postives = 116/248 (46.77%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P   +L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---MLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_ECOL6 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O6 GN=ugd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 75/248 (30.24%), Postives = 115/248 (46.37%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 74/256 (28.91%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSC 754
            +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC
Sbjct:   25 DVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSC 268          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 74/256 (28.91%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSC 754
            +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC
Sbjct:   25 DVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSC 268          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG5_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 69/245 (28.16%), Postives = 114/245 (46.53%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV   D    +++  N    PI +  ++  +     K L F     K+ +  +  +V + TPT           D +  E+  R + +++ +  I+V KSTVPV   + I++ L  N+      I+ +PEFL EG A+ D  +P R++IG       + AV   +      +P   +L T+   AE  KL +N +LA R++  N + +  E+ G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   28 EVVAFDTHQKKVDLLNDKLSPIEDKEIENYLST---KILNFRATTNKYEAYKNANYVIIATPTNYDP--GSNYFDTSSVEAVIRDVTEINPN-AIMVVKSTVPVGFTKTIKEHLGINN------IIFSPEFLREGRALYDNLHPSRIIIGECSERAERLAVLFQEGAIKQNIP---VLFTDSTEAEAIKLFSNTYLAMRVAFFNELDSYAESFGLNTRQIIDGVCLDPRIGNYYNNPSFGYGGYC 257          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: UDG_SALTY (UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium GN=udg PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 72/250 (28.80%), Postives = 113/250 (45.20%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            +V  +DI  SR+   N    PI +  +   +K+    N+ F   ++K  +  +  +V + TPT    KT              ES  + +  ++ +  +++ KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D   P R++IG +     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E  G N  Q+   V  D  IG  + N S G+GG C
Sbjct:   24 DVVALDIVPSRVELLNDRISPIVDKEIQQFLKE---DNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSV------ESVMQDVISINPAAVMII-KSTVPVGFTAAMRQKFATEN-------IIFSPEFLREGKALYDNLYPSRIVIGEQSERAREFAALLQEGAIKQEIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYC 253          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 71/255 (27.84%), Postives = 115/255 (45.10%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            EV  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DL+Y E+AAR IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP+  +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++         +    L    G GG C
Sbjct:   34 EVIGVDINQHAVDTINQGRIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLDN-----KQPDLSYIEAAARAIAPVLKRGDLVVLESTSPVGATEQLSDWLSAQRPDLSFPHQQGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPKCSEAAQRLYELFV----RGRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHC 272          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 71/259 (27.41%), Postives = 120/259 (46.33%), Query Frame = 2
Query:    8 GPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--XIGPKFLNASVGFGGSC 754
            G   EV  VDIS ++I+  N  + PI EPGL  ++ +  +   L  +T+V + V   ++  + V TP+K  G       +L Y E   R     + D ++   +VV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G++    L  +YA    +  I+   +  AE+ K   N + A +++  N +  + +A G +  +V   V  D+   +   ++   + FGGSC
Sbjct:   21 GRGHEVVGVDISAAKIDMINQGKSPIVEPGLGELLAEGVKTGRLRGTTNVTEAVLATELSMLCVGTPSKLNG-----DLELDYIEEVCRQMGSALRDKTERHTVVVRSTVLPGTVHNVVIPILEEFSGKKAGVDFGVAVNPEFLRESTAIKDYNFPPMTVIGELDKASGRR----LASIYAEL--DAPIVRKGIAVAEMIKYTCNVWHATKVTFANEIGNIAKAAGVDGREVMEVVCMDNKLNLSQYYMRPGLAFGGSC 268          
BLAST of FC929144 vs. ExPASy Swiss-Prot
Match: EPSD2_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 70/255 (27.45%), Postives = 114/255 (44.71%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSXIGPKFLNASVGFGGSC 754
            E+  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DLTY E+AA+ IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP   +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++         +    L    G GG C
Sbjct:   34 ELIGVDINQHAVDTINQARIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLED-----KQPDLTYIEAAAKAIAPVLKRGDLVVLESTSPVGATEQLSAWLSEQRSDLSFPHQLGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPRCSQAAQRLYELFVR----GRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHC 272          
The following BLAST results are available for this feature:
BLAST of FC929144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
UDG_SHIFL1.807e-1730.24Putative UDP-glucose 6-dehydrogenase OS=Shigella f... [more]
UDG_ECOLI1.807e-1730.24UDP-glucose 6-dehydrogenase OS=Escherichia coli (s... [more]
UDG_ECOL61.807e-1730.24UDP-glucose 6-dehydrogenase OS=Escherichia coli O6... [more]
ALGD_PSESM2.360e-1728.91GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESH3.082e-1728.91GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
UDG5_ECOLX6.866e-1728.16UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
UDG_SALTY1.171e-1628.80UDP-glucose 6-dehydrogenase OS=Salmonella typhimur... [more]
EPSD1_RALSO1.530e-1627.84NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
ALGD_AZOVI1.530e-1627.41GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
EPSD2_RALSO1.998e-1627.45NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CE10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929144 ID=FC929144; Name=FC929144; organism=Citrus clementina; type=EST; length=755bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAGTCAATA
CCCCAACCAAAACTCAGGGTCTCGGTGCTGGCAAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGAC
TCTANGATTGGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTC
CTGCT
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