FC929147

Overview
NameFC929147
Unique NameFC929147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  412 LYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGG-MHIVLELSPNGSLASLLYGM-KEKLKWGIRYKIALG 753
            L  ++ ATN+F     IG GG+ +VYKG L +G  VA+KR     + + +A+F +E+ +++   H +   L+GY  E   M +V E   NG+L S LYG     L W  R +I +G
Sbjct:  472 LVAVKEATNSFDENRAIGVGGFGKVYKGELHDGTKVAVKR-ANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIG 586          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGG-MHIVLELSPNGSLASLLYGMK-EKLKWGIRYKIALG 753
            + FSL ELQ  T NF    +IG GG+  VY G + +G  VAIKR     +++ I +F +E+ +++ + H +   L+GY  E   M +V E   NG     LYG     L W  R +I +G
Sbjct:  511 RYFSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKR-GNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIG 629          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  292 TLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGI-MAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY---GMKEKLKWGIRYKIALG 753
            T +  KL+ +R++S R  ++                  F L +LQSAT NFS  NL+G+G    VY+ +  +G+ +A+K++     D   ++ ++ + + ++ + H N A+L+GY  E G + +V E   NGSL   L+      + L W  R +IALG
Sbjct:  372 TEFANKLNAKRTTSTRSAVE------------------FELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSKPLTWNTRVRIALG 512          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  328 SSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLYGMKE---KLKWGIRYKIALG 753
            S +  G D   +L +   +S+   K  +++EL  AT+NFS  N+IG GG+  VYK  L NG  +A+K+LT G    +  +F +E+ +++   H N   L GY +     I++     NGSL   L+   E   +L W  R  I  G
Sbjct:  765 SEVPPGSDKDISLVLLFGNSRYEVKDLTIFELLKATDNFSQANIIGCGGFGLVYKATLDNGTKLAVKKLT-GDYGMMEKEFKAEVEVLSRAKHENLVALQGYCVHDSARILIYSFMENGSLDYWLHENPEGPAQLDWPKRLNIMRG 909          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTR-GTADEIIADFLSELGIMA-----HVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLYGMKEKLKWGIRYKIA 747
            F+  ++  AT+NFS E ++G+GGY  VY+G L +G+ VA+K+L R GT  E   +F +E+ +++        HPN  +L G+ ++G   I++ E    GSL  L+   K KL+W  R  IA
Sbjct:  802 FTYADILKATSNFSEERVVGRGGYGTVYRGVLPDGREVAVKKLQREGTEAE--KEFRAEMEVLSANAFGDWAHPNLVRLYGWCLDGSEKILVHEYMGGGSLEELITD-KTKLQWKKRIDIA 919          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGI-EGGMHIVLELSPNGSLASLLYGMKEK--LKWGIRYKIA 747
            ++  E++ AT++FS +N++G G Y  VY G   N   VAIKRL        I   ++E+ +++ V HPN  +LLG    +G   +V E  PNG+L   L   + +  L W +R  IA
Sbjct:  300 YTYKEIEKATDSFSDKNMLGTGAYGTVYAGEFPNSSCVAIKRLKHKDTTS-IDQVVNEIKLLSSVSHPNLVRLLGCCFADGEPFLVYEFMPNGTLYQHLQHERGQPPLSWQLRLAIA 415          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  301 PLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTAD-EIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLY---GMKEKLKWGIRYKIAL 750
            P + S++R++S              S+   +  K F++  LQ  TN+FS ENLIG G    VY+  L  G+L A+++L + + + E    FL  +  +  + H N  +L+G+  E    +++ E   NG+L  LL+    +K +L W +R +IAL
Sbjct:  444 PAEASLKRTTS-------------KSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIAL 585          
The following BLAST results are available for this feature:
BLAST of FC929147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
Y5597_ARATH7.352e-1136.21Probable receptor-like protein kinase At5g59700 OS... [more]
Y2214_ARATH7.352e-1135.83Probable receptor-like protein kinase At2g21480 OS... [more]
SRF5_ARATH7.352e-1130.19Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
PSYR1_ARATH7.352e-1132.88Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
Y1743_ARATH9.603e-1137.19Probable LRR receptor-like serine/threonine-protei... [more]
WAKLR_ARATH9.603e-1135.04Wall-associated receptor kinase-like 21 OS=Arabido... [more]
SRF1_ARATH9.603e-1130.32Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929147 ID=FC929147; Name=FC929147; organism=Citrus clementina; type=EST; length=754bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAGA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGG
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