FC929147

Overview
NameFC929147
Unique NameFC929147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGY-----GIEGGMHIVL-ELSPNGSLASLLYG-MKEKLKWGIRYKIALG 753
            FS  E++ ATNNFS  N+IG+GGY  V+KG L +G  VA KR    +A    A+F  E+ ++A + H N   L GY       EG   I++ +L  NGSL   L+G ++ +L W +R +IALG
Sbjct:  271 FSFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRFKNCSAGG-DANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFGDLEAQLAWPLRQRIALG 392          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  307 KLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRL-RNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYGM---KEKLKWGIRYKIALG 753
            KLS + +   +  + +PR+        Q     F+  EL +AT NF  +  +G+GG+  VYKGRL   GQ+VA+K+L R    +   +FL E+ +++ + HPN   L+GY  +G    +V E  P GSL   L+ +   KE L W +R KIA G
Sbjct:   46 KLSSKTNGGSKRELLLPRDGL-----GQIAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGL-QGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAG 193          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 52/158 (32.91%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  289 VTLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY--GMKEKLKWGIRYKIALG 753
            + L  + L I +    ++ I++P  + +N  +S      F L  +++AT NFS  N +G GG+ EVYKG L NG  +A+KRL++ T+ +   +F +E+ ++A + H N  +LLG+ ++G    +V E  PN SL   L+    + +L W +R  I  G
Sbjct:  314 IILIVVGLVICKRRKQKQEIELP--IVLNEAESVQ----FDLKTIEAATGNFSEHNKLGAGGFGEVYKGMLLNGTEIAVKRLSK-TSGQGEIEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVPNKSLDYFLFDPNKRNQLDWTVRRNIIGG 464          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMKEK--LKWGIRYKIALG 753
            F L  +  ATN FS EN +G+GG+  VYKG L +GQ +A+KRL  G+    + +F +E+ ++  + H N  KLLG+  EG   I V E  PN SL   ++   ++  L W +RY+I  G
Sbjct:  328 FDLGMILIATNEFSLENKLGQGGFGSVYKGILPSGQEIAVKRLAGGSGQGEL-EFKNEVLLLTRLQHRNLVKLLGFCNEGNEEILVYEHVPNSSLDHFIFDEDKRWLLTWDVRYRIIEG 445          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 54/159 (33.96%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  286 LVTLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLY--GMKEKLKWGIRYKIALG 753
            LV+L  L +  RR  S +       +    ++  Q     FS   +++AT+ FS  N+IG+GG+ EVY+G+L +G  VA+KRL++ T+ +   +F +E  +++ + H N  +LLG+ +EG   I V E  PN SL   L+    + +L W  RY I  G
Sbjct:  298 LVSLVVLLVVCRRKKSYKTTEVQATDEITTTHSLQ-----FSFKTIEAATDKFSDSNMIGRGGFGEVYRGKLSSGPEVAVKRLSK-TSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEKILVYEFVPNKSLDYFLFDPAKQGELDWTRRYNIIGG 450          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  247 LFYDLF--RNKSKKSLVTLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYG--MKEKLKWGIRYKIALG 753
            LF  +F  R K +K ++   PL    R+ + + E +    +    +   Q     F    + +ATNNF   N +G+GG+ EVYKG   +G  VA+KRL++ T+ +   +F +E+ ++A + H N  +LLGY +EG   I V E   N SL   L+   MK +L W  RYKI  G
Sbjct:  446 LFVAVFSVRTKRRKKMIGAIPLLNVKRKDTEVTEPLAENGDSITTAGSLQ-----FDFKAIVAATNNFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSK-TSGQGEREFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSLDYFLFDTTMKRQLDWTRRYKIIGG 613          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  283 SLVTLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGY-GIEGGMHIVLELSPNGSLASLLYG-MKEKLKWGIRYKIALG 753
            SL  ++ +K S R+  +    ++    L     + +S  K ++  EL SAT++FS  + IG+GGY +VYKG L  G +VA+KR  +G+  +   +F +E+ +++ + H N   LLGY   +G   +V E  PNGSL   L    ++ L   +R +IALG
Sbjct:  579 SLALVFFIKRSKRKRKTREVDMEQEHPLPKPPMNMESV-KGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSL-QGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQPLSLALRLRIALG 735          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  367 FVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRG-TADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY---GMKEKLKWGIRYKIALG 753
            F    +S S   +F++  LQ  TNNFS EN+IG+G    VY+  LR+G+ +A+K+L+      +   +FL+ +  +  +   +  +LLGY  E G   +V E  PNGSL   L+    + +KL W +R  IALG
Sbjct:  472 FPPGLNSSSSATVFTIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALG 605          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYGMK--EKLKWGIRYKIALG 753
            FS   L+ AT+ FS +N +G+GG   VYKG L NG+ VA+KRL   T  + +  F +E+ +++ VDH N  KLLG  I G    +V E   N SL   L+  K  + L W  R+KI LG
Sbjct:  311 FSYENLERATDYFSDKNKLGQGGSGSVYKGVLTNGKTVAVKRLFFNT-KQWVDHFFNEVNLISQVDHKNLVKLLGCSITGPESLLVYEYIANQSLHDYLFVRKDVQPLNWAKRFKIILG 428          
BLAST of FC929147 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYG--MKEKLKWGIRYKIALG 753
            F L  ++SAT+NFS  N +GKGG+ EVYKG L NG  +A+KRL++ T+ +   +F +E+ ++A + H N  +LLG+ ++G    +V E   N SL   L+    + +L W +R  I  G
Sbjct:  327 FDLKTIESATSNFSERNKLGKGGFGEVYKGMLMNGTEIAVKRLSK-TSGQGEVEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVSNKSLDYFLFDPTKRNQLDWTMRRNIIGG 444          
The following BLAST results are available for this feature:
BLAST of FC929147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RKF3_ARATH1.096e-1441.46Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH1.096e-1435.71Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
CRK17_ARATH1.432e-1432.91Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
CRK36_ARATH1.870e-1439.50Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
CRK35_ARATH1.870e-1433.96Putative cysteine-rich receptor-like protein kinas... [more]
CRK23_ARATH1.870e-1434.48Putative cysteine-rich receptor-like protein kinas... [more]
Y5374_ARATH3.189e-1433.96Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH3.189e-1435.82Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
CRK3_ARATH3.189e-1442.02Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
CRK18_ARATH3.189e-1438.66Cysteine-rich receptor-like protein kinase 18 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929147 ID=FC929147; Name=FC929147; organism=Citrus clementina; type=EST; length=754bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAGA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGG
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