FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ECO24 (Glycogen synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 332
            AD +++PSRFEPCGL QL+AM YGTVP+V + GGL DTV   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  699 ADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTV-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PSEPK (Glycogen synthase OS=Pseudomonas putida (strain KT2440) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSW 296
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E G TGF     +V+          +    + RA   YG + L   M+   M Q  +W
Sbjct:  410 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIECGVTGFLFNESTVE----------SYREALSRAFYVYGKKDLLNAMRCLSMTQPFNW 496          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_FLAJ1 (Glycogen synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV--DPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D+IL+PSR EPCGL Q++AMRYGT+PIV  TGGL DTV +         F  D   +  D   V  +  ++ RA+  Y  + +   +++ GMA D SW+   +++ E
Sbjct:  366 SDYILMPSRVEPCGLNQMYAMRYGTIPIVRRTGGLRDTVID---------FGDDGNGICHDQASVGDICYSINRAVKLYDDKISFNTVLRRGMAADHSWERVCQEYIE 464          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLMU (Glycogen synthase OS=Chlamydia muridarum GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 239
            AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV +G  GF   SFS      +P D       + +A+ATY
Sbjct:  373 ADMICIPSMFEPCGLTQMIGMRYGTVPVVRATGGLADTVTDGVNGF---SFS------NPHDFHEFRNMLSKAIATY 440          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_SYNP6 (Glycogen synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA  +Y  Q    ++ + GMA DLSWK  A  +E+
Sbjct:  348 SDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFHHDPRHAEGN-GYCFDRYEPLD---LYTCLVRAWESYQYQPQWQKLQQRGMAVDLSWKQSAIAYEQ 449          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_SYNE7 (Glycogen synthase OS=Synechococcus elongatus (strain PCC 7942) GN=glgA PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA  +Y  Q    ++ + GMA DLSWK  A  +E+
Sbjct:  348 SDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFHHDPRHAEGN-GYCFDRYEPLD---LYTCLVRAWESYQYQPQWQKLQQRGMAVDLSWKQSAIAYEQ 449          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_SHISS (Glycogen synthase OS=Shigella sonnei (strain Ss046) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDNNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_RHOCS (Glycogen synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            AD +L+PSRFEPCGL Q++A+RYG +P+V+  GGL DTV +  T   +   S      +PV +  +   + RA A +    L   + +N M +D+ W   A+ + +
Sbjct:  387 ADVLLVPSRFEPCGLTQMYALRYGALPLVSRVGGLADTVTD-VTESSLADGSATGFVFEPVGLMPLIHAMERAAALWRRPDLWRTVQRNAMGRDVGWAASARHYAD 491          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 323
            D  L+PSRFEPCGL Q+ ++RYG VP+V +TGGL DT+++   + G   G    D +        A+  T+ RAL  Y  +     ++M+ GMA D SW   A  +EE
Sbjct:  369 DIFLMPSRFEPCGLGQMISLRYGAVPVVRATGGLEDTIKDLHQYPGVGNGFTFRDYQP------QALLDTINRALHVYRHEPGEWRKLMRRGMAADFSWSASAGHYEE 470          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_ECO241.198e-1238.46Glycogen synthase OS=Escherichia coli O139:H28 (st... [more]
SSY23_ORYSI1.565e-1240.00Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA_PSEPK1.565e-1238.14Glycogen synthase OS=Pseudomonas putida (strain KT... [more]
GLGA_FLAJ11.565e-1238.89Glycogen synthase OS=Flavobacterium johnsoniae (st... [more]
GLGA_CHLMU1.565e-1251.95Glycogen synthase OS=Chlamydia muridarum GN=glgA P... [more]
GLGA_SYNP62.044e-1242.45Glycogen synthase OS=Synechococcus sp. (strain ATC... [more]
GLGA_SYNE72.044e-1242.45Glycogen synthase OS=Synechococcus elongatus (stra... [more]
GLGA_SHISS2.044e-1238.46Glycogen synthase OS=Shigella sonnei (strain Ss046... [more]
GLGA_RHOCS2.044e-1235.85Glycogen synthase OS=Rhodospirillum centenum (stra... [more]
GLGA_MOOTA2.044e-1239.81Glycogen synthase OS=Moorella thermoacetica (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top