FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 353
            AD  L+PS+FEPCGL Q+ AMRYG VPIV  TGGL DTV+       EG TGF   +F+             +  T++RA + Y  + + E +MK  M++D SW   A K+ + L +  +AGS
Sbjct:  368 ADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFNAH----------DMLYTIQRARSFYEQKEIWETIMKQAMSRDYSWAKSAFKYNQ-LYDELMAGS 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PSESM (Glycogen synthase OS=Pseudomonas syringae pv. tomato GN=glgA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNL 338
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +V+          + +  + R    +    L   M+   MA   +W    + + E   +L
Sbjct:  374 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFNESTVE----------SYTEALNRTFQVFAHPELLNAMRCRAMAAPFNWHQAVEPYAELYRDL 474          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ESCF3 (Glycogen synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  M+ D SW   AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMSMDFSWHVAAKSYRELYYRLK 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJB (Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 47/121 (38.84%), Postives = 62/121 (51.24%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLNLEVAGSEP 359
            AD  L+PSRFEPCG+ Q+ AMRYG VPIV  TGGLVDTV        +G+        D  +     T + RA   +   +    + K GMA D SW   A ++    E +LNL +   +P
Sbjct:  361 ADAFLMPSRFEPCGISQMIAMRYGCVPIVRRTGGLVDTVSHHIPSKGIGT----GYCFDRYEALDFYTCLARAWEAFQHKETWQALQKRGMASDFSWHRSALEYLRMYELILNLPLLPEKP 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_RHIME (Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 323
            AD +L+PSRFEPCGL QL+A+RYG VP+VA TGGL +T+ +          +   +   P+D   +   +RR    Y  + + E + + GM  D SW   A ++ +
Sbjct:  366 ADAMLVPSRFEPCGLTQLYALRYGCVPVVARTGGLSETIIDANDAALHAHVATGIQFA-PIDEDGLRHALRRTFRLYRLRRVWEGLRRQGMKTDCSWHRSAARYAD 470          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 332
            AD +++PSRFEPCGL QL+AM YGTVP+V + GGL DT+   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  699 ADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTM-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL--AEMMKNGMAQDLSWKGPAKKW 317
            +D  L+PSR+EPCGL Q++++RYGT+PIV  TGGL DTV    E   TG   G    D         + +   V RAL  Y  + +   +++ N M  DLSW+  AK++
Sbjct:  369 SDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVLEYDENKMTGNGFGFVEYDS--------SKLLKAVARALDFYKNKKVHWKKLIDNAMKTDLSWERSAKEY 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PSEU2 (Glycogen synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glgA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSW 296
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +V+          + +  + RA   +    L   M+   MA   +W
Sbjct:  374 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFNESTVE----------SYTQALDRAFQVFAHPELLNAMRCRAMAAPFNW 460          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROM9 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 52/142 (36.62%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG+VPIV   GGLVDTV          TGF    F       +P+D    ++ VR   A     +   + K  M+Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSVPIVRRVGGLVDTVLPHDPENNSGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWELLQKRAMSQEFSWQRSALEYE--MMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PECCP (Glycogen synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD I++PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    DC       V ++S  +RR    +    L   + +  MA D  W+  A+ +
Sbjct:  367 ADVIMVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGLASGFVFNDC------SVGSLSRAIRRVFVLWSRPTLWRYVQRQAMAMDFGWQVAAQAY 469          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_ANOFW2.044e-1241.46Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_PSESM2.669e-1232.43Glycogen synthase OS=Pseudomonas syringae pv. toma... [more]
GLGA_ESCF32.669e-1236.75Glycogen synthase OS=Escherichia fergusonii (strai... [more]
GLGA2_SYNJB2.669e-1238.84Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 ... [more]
GLGA2_RHIME2.669e-1236.79Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2... [more]
SSY23_ORYSJ3.486e-1239.09Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA_THEM43.486e-1239.45Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
GLGA_PSEU23.486e-1236.08Glycogen synthase OS=Pseudomonas syringae pv. syri... [more]
GLGA_PROM93.486e-1236.62Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PECCP3.486e-1237.61Glycogen synthase OS=Pectobacterium carotovorum su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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