FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_MARAV (Glycogen synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT-YGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSE 356
            AD  L+PSRFEPCGL Q++++RYGTVP+V   GGL DTV        E   GF     + D          A+   + RALA     +   ++ +NGM  D SWK  A ++     NL +AG++
Sbjct:  371 ADIFLMPSRFEPCGLNQMYSLRYGTVPVVHGVGGLNDTVFDPNEETPEQANGFVFREATPD----------ALHAAITRALAAREDRKTWRKLQENGMKGDYSWKNRAGEYAALYRNL-IAGND 483          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_MANSM (Glycogen synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKWEE 323
            D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T   +          +  +  A+S  + RA + +  Q     ++   M QD SW+  A+++EE
Sbjct:  369 DVILVPSRFEPCGLTQLYGLKYGTLPLVRQTGGLADTVVDS-TAENIKERRATGFVFNEANSQALSHAISRAFSLWKKQRTWFTVRTVAMEQDFSWQISARRYEE 472          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HAEIG (Glycogen synthase OS=Haemophilus influenzae (strain PittGG) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 317
            D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T   + + +      +     A+   ++RA A +   +A A +  + MAQD SW+  A+++
Sbjct:  368 DVILVPSRFEPCGLTQLYGLQYGTLPLVRKTGGLADTVVDS-TSESIKACTATGFVFESATPEALRHCLQRAFALWQKPRAWAIVRTDAMAQDFSWRKAAEQY 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ERWCT (Glycogen synthase OS=Erwinia carotovora subsp. atroseptica GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD I++PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    DC       V ++S  +RR    +    L   + +  MA D  W+  A+ +
Sbjct:  367 ADVIMVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGLASGFVFNDC------SVGSLSRAIRRVFVLWSRPTLWRYVQRQAMAMDFGWQVSAQAY 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ENTS8 (Glycogen synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 323
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  M  D SW+  AK + E
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMGMDFSWQVAAKSYRE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKW 317
            +D   +PSRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV     GF+            P    A+    ++A A +  Q+  E  +   MA D SW GPA+++
Sbjct:  344 SDAFAMPSRFEPCGLSQMIAMRYGTLPVVRETGGLVDTVPPD-VGFRF----------QPATPEALVEACQQARAAFEDQSDWEARVARAMALDFSWDGPAREY 436          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 338
            +D  L+PSRFEPCG+ QL A+RYG+VPIV  TGGL DTV     FTG   G       A D      +  T++RA+   Y     +++++ GM  D SW+  A+K+     N+
Sbjct:  369 SDMFLMPSRFEPCGIGQLIALRYGSVPIVRETGGLNDTVFSYNEFTGEGNGFSFTSFNARD------MLYTIKRAIGFYYDKDVWSKLVQRGMNGDYSWEKAAEKYMRVYSNI 475          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOMG (Glycogen synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            ADF L+PS FEPCGL Q++++RYGT+PIV +TGGL D+VE         TGF+  S           D  A+  TV  A+ T  +   A+  ++ N MA+  +W+  A ++E+
Sbjct:  378 ADFFLMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEKTLVGTGFKFWS----------RDAGALFDTVGWAVHTWYHRKDAMERLIANAMAKRFTWEDAAARYED 480          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_RHITR (Glycogen synthase OS=Rhizobium tropici GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 353
            D I+IPSRFEPCGL QL+ +R G +PIVA TGGL DT+ +          +   +   PV    +   +RRA+  +  + +  +M K GM  D+SW   A+++     +L   G+
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRSGCLPIVARTGGLNDTIIDANHAALQAKVATGIQ-FSPVTAEGLLQAMRRAMHLFQDRKVWTQMQKQGMKSDVSWGRSAERYAALYSSLVSRGA 480          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROM0 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV          TGF    F       +P+D    ++ VR   A     +   + K  M+Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNSGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWKLLQKRAMSQEFSWQRSALEYE--IMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_MARAV3.486e-1237.90Glycogen synthase OS=Marinobacter aquaeolei (strai... [more]
GLGA_MANSM3.486e-1238.10Glycogen synthase OS=Mannheimia succiniciproducens... [more]
GLGA_HAEIG3.486e-1238.83Glycogen synthase OS=Haemophilus influenzae (strai... [more]
GLGA_ERWCT3.486e-1237.61Glycogen synthase OS=Erwinia carotovora subsp. atr... [more]
GLGA_ENTS83.486e-1237.84Glycogen synthase OS=Enterobacter sakazakii (strai... [more]
GLGA_DEIDV3.486e-1241.35Glycogen synthase OS=Deinococcus deserti (strain V... [more]
GLGA_CLONN3.486e-1239.82Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA1_GEOMG3.486e-1238.94Glycogen synthase 1 OS=Geobacter metallireducens (... [more]
GLGA_RHITR4.553e-1235.65Glycogen synthase OS=Rhizobium tropici GN=glgA PE=... [more]
GLGA_PROM04.553e-1235.92Glycogen synthase OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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