FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_FUSNN (Glycogen synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            AD  L+PS FEPCGL Q+ AMRYG +P+V  TGGL DTV+    +TG   G       A D +       T++ A+  Y       E++KN   +D SW  PAK+++E
Sbjct:  352 ADIFLMPSVFEPCGLSQMIAMRYGCIPVVRETGGLKDTVKPYNEYTGEGDGFGFKQANADDMI------KTLKYAIKMYHRPNVWQEIIKNAKKRDNSWDKPAKRYKE 453          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_ANAVT (Glycogen synthase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT------VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWE 320
            +D  L+PSRFEPCG+ Q+ A+RYG++PIV  TGGLVDT      V E  TG+    +       +P+D   + T + RA   +  +    E+ K GM+QD SW   AK+++
Sbjct:  348 SDAFLMPSRFEPCGISQMMALRYGSIPIVRRTGGLVDTVSHHDPVNEAGTGYCFDRY-------EPLD---LFTCMIRAWEGFRYKPQWQELQKRGMSQDFSWYKSAKEYD 448          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA1_ANASP (Glycogen synthase 1 OS=Anabaena sp. (strain PCC 7120) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 323
            D  L+PSRFEPCG+ Q+ A+RYG++PIV  TGGLVDTV       E  TG+    +       +P+D   + T + RA   +  +    E+ K GM+QD SW   AK++++
Sbjct:  349 DAFLMPSRFEPCGISQMMALRYGSIPIVRRTGGLVDTVSHHDPINEAGTGYCFDRY-------EPLD---LFTCMIRAWEGFRYKPQWQELQKRGMSQDFSWYKSAKEYDK 449          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 317
            AD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  373 ADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 317
            AD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  373 ADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 317
            AD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  373 ADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS5 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE---AVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPA 308
            D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+          + +  C       P +  A +  +RR +  Y   AL E + KN M   + W+  A
Sbjct:  368 DAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI----INANPAALTAGCATGLTFHPTEPPAFAEALRRLIHLYADHALWEKVQKNAMRHPVGWQTSA 466          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HAEPS (Glycogen synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF---------TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +           TGF    FS         D       V RA+  +G   L + + +N +AQD  W   A++++E
Sbjct:  368 DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVNDAHKESIENRTATGF---VFSYP-------DADNFYDAVLRAINLWGKNKLWSSVRQNALAQDFGWAKVAQQYQE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_BACST (Glycogen synthase OS=Bacillus stearothermophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEE 323
            AD  LIPS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+       EG  GF   +F+             +  T+RRAL+ Y   ++ E + +  M  D SW+  A ++++
Sbjct:  368 ADLFLIPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQSYNEITKEG-NGFSFTNFNAH----------DMLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQ 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PSEPF (Glycogen synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=glgA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 170
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E G TGF     + D
Sbjct:  376 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFNESTAD 429          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_FUSNN4.553e-1240.74Glycogen synthase OS=Fusobacterium nucleatum subsp... [more]
GLGA2_ANAVT4.553e-1239.64Glycogen synthase 2 OS=Anabaena variabilis (strain... [more]
GLGA1_ANASP4.553e-1239.64Glycogen synthase 1 OS=Anabaena sp. (strain PCC 71... [more]
GLGA_THESQ5.947e-1240.95Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP15.947e-1240.95Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_THEMA5.947e-1240.95Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_RHOS55.947e-1236.89Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_HAEPS5.947e-1238.60Glycogen synthase OS=Haemophilus parasuis serovar ... [more]
GLGA_BACST5.947e-1239.82Glycogen synthase OS=Bacillus stearothermophilus G... [more]
GLGA_PSEPF7.767e-1251.85Glycogen synthase OS=Pseudomonas fluorescens (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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