FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PSE14 (Glycogen synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSW 296
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +++          + +  + R    +  + L   M+   MA   +W
Sbjct:  374 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFKESTIE----------SYTEALNRTFQVFAHRELLNAMRCRAMAAPFNW 460          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROM4 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            D  L+PSRFEPCG+ QL AMRYG++P+V + GGLVDTV       Q G+ F  D    +P+D    +  VR   A    ++   +    M Q  SW   A ++E   +  +V G  EP  D EE+   +    A P
Sbjct:  349 DAFLMPSRFEPCGISQLLAMRYGSIPVVRNVGGLVDTVSPHDPSKQTGTGFCFD--RFEPIDF--YTALVRSWEAYRHRRSWRRLQIRAMTQTYSWDRSAYEYEN--MYKDVCGVKEPSPDAEEVEKFSVGQDADP 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 317
            +D IL+PSRFEPCGL QL+ ++YGT+P+V   GGLVDTV        +   TGF    FS D           +     RA A +  +A   ++ + GM Q   W+  A+++
Sbjct:  377 SDLILVPSRFEPCGLTQLYGLKYGTLPVVRRVGGLVDTVADARLETLDHDATGFVFDDFSAD----------GLIGACLRAKALFRRRADWLQVQRRGMQQPFGWEDSARQY 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_KLEP3 (Glycogen synthase OS=Klebsiella pneumoniae (strain 342) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A+      ++   +RRA   +   +L   + +  M  D SW+  A  + E
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGLATGFVFEDSNAL------SLLRAIRRAFVLWSRPSLWRYVQRQAMNMDFSWQVAANSYRE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_FINM2 (Glycogen synthase OS=Finegoldia magna (strain ATCC 29328) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            ADF+++PS FEPCG+ QL AMRYGT+P+V  TGGL DTV + F  F           ++  D      T+RRA++ Y       + +N M     W+  AK++ E
Sbjct:  367 ADFLMMPSIFEPCGISQLIAMRYGTIPVVRETGGLRDTV-QSFNEFSKEGNGFSFTNINAHDFL---YTLRRAISFYYNDDFNIIKENAMNSKNDWEKSAKEYIE 467          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 317
            +D +++PSRFEPCGL QL AMRYGT+P+V   GGL DTV ++ F+   +     +       D   + + + RA+A Y        E+MKN M  D SW  P + +
Sbjct:  374 SDVMVVPSRFEPCGLTQLIAMRYGTIPVVREIGGLADTVIDKDFSHRPL--HERNGYVFRDYDERGLESALGRAIACYYQYPDHFRELMKNAMRYDYSWNHPGQDY 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THET2 (Glycogen synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            A+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  340 AEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THECA (Glycogen synthase OS=Thermus caldophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            A+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  341 AEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 431          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_SYNR3 (Glycogen synthase OS=Synechococcus sp. (strain RCC307) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVD-CEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIA 383
            +D  L+PSRFEPCG+ QL +MRYGT+P+V   GGLVDTV       Q G+ F  D  EA+D      + T + RA   Y  Q +  ++MK  M  D SW   A +++   +  +V G  EP  + + +A
Sbjct:  348 SDAFLMPSRFEPCGISQLLSMRYGTIPVVRRVGGLVDTVPPYVPATQEGNGFCFDRYEAID------LYTALVRAWEAYRHQDSWQQLMKRVMQVDFSWARSALEYDR--MYRDVCGMKEPTPEADAVA 468          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROMM (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCG+ QL AMRYG+VP+V   GGLVDTV       Q G+ F  D    +PVD    +  VR   A        E+ + GM Q+ SW   A  +E+
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSVPVVRKVGGLVDTVPSYDPIHQTGTGFCFD--RFEPVDF--YTALVRSWEAFRHRDCWRELQQRGMTQNYSWDRSALDYEQ 449          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_PSE147.767e-1234.02Glycogen synthase OS=Pseudomonas syringae pv. phas... [more]
GLGA_PROM47.767e-1236.76Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_LEPCP7.767e-1236.61Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_KLEP37.767e-1236.94Glycogen synthase OS=Klebsiella pneumoniae (strain... [more]
GLGA_FINM27.767e-1239.05Glycogen synthase OS=Finegoldia magna (strain ATCC... [more]
GLGA2_METCA7.767e-1238.68Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA_THET21.014e-1140.00Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_THECA1.014e-1140.00Glycogen synthase OS=Thermus caldophilus GN=glgA P... [more]
GLGA_SYNR31.014e-1138.76Glycogen synthase OS=Synechococcus sp. (strain RCC... [more]
GLGA_PROMM1.014e-1142.45Glycogen synthase OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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