FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_KLEP7 (Glycogen synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    D  A+      ++   +RRA   +   +L   + +  M  D SW+  A  + E
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVADSSLENLADGLATGFVFEDSNAL------SLLRAIRRAFVLWSRPSLWRYVQRQAMNMDFSWQVAANSYRE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_EDWI9 (Glycogen synthase OS=Edwardsiella ictaluri (strain 93-146) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSW 296
            AD I++PSRFEPCGL QL+ ++YG++P+V  TGGL DTV     E    G   G    D  A D      ++  +RRAL  +G   L   + +  MAQ   W
Sbjct:  367 ADVIVVPSRFEPCGLTQLYGLKYGSLPLVRHTGGLADTVNDCALENLADGSATGFVFHDANAAD------LARAIRRALVLWGRPTLWRYVQRQAMAQSFGW 462          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ALHEH (Glycogen synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDG 371
            D  L+PSRFEPCGL QL+++RYGT P+V +TGGL DTV +  T    G+       +   +  A++ TV RA A +   A    +   GM  D SW   A+ +      L +  + PG +G
Sbjct:  372 DLFLMPSRFEPCGLNQLYSLRYGTPPVVTATGGLADTVMDVDTDPTAGNGF----HLPAANAGALAATVERATAHWRRPAAWKRIQARGMGGDYSWDASAEAY------LRLYRNTPGNNG 482          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 317
            +D  L+PSR+EPCGL Q++++RYGTVPIV  TGGL D+V+E    +   +   +       D A +  TV +A+  Y  +     +++KN M  D+SW   AK++
Sbjct:  373 SDMFLMPSRYEPCGLGQMYSLRYGTVPIVRYTGGLADSVKE----YDPKTRDGNGFGFREYDTAHLLETVAKAVYFYKKEKDHWGKVVKNAMKTDVSWDRSAKQY 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ROSDO (Glycogen synthase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D ILIPSRFEPCGL QL+ +RYGT+P+VA TGGL DT+ +        + +   +   PV   A+S  + R    +   +  + MM+  M   + W+  +K + E
Sbjct:  367 SDAILIPSRFEPCGLTQLYGLRYGTIPVVARTGGLADTIIDANEAALAATCATGVQFA-PVTPDALSHAIDRCCDLFAERKTWSGMMRCAMRHPVGWETSSKAYLE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_RALSO (Glycogen synthase OS=Ralstonia solanacearum GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 317
            AD +L  SRFEPCGL  L+AMRYGTVP+ +  GGLVDT+ +         G TGF            D     A++  V RAL  +   +A   +  NGM  D  W  PA ++
Sbjct:  370 ADLLLHGSRFEPCGLTPLYAMRYGTVPVASRVGGLVDTIADRGSPEAALRGATGF----------LFDGETPEAMAGAVARALRVFVQPRAWRVLQYNGMTTDFGWSQPASEY 472          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROMS (Glycogen synthase OS=Prochlorococcus marinus (strain AS9601) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV     E    TGF    F       +P+D    ++ VR   A     +   + K  M+Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNIGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWELLQKRAMSQEFSWQRSALEYE--VMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_PROM2 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV          TGF    F       +P+D    ++ VR   A     +   + K  M Q+ SW+  A ++E  ++  +V G  EP  D  E+   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNHGTGFCFDRF-------EPIDF--YTSLVRSWEAFRHKDSWELLQKRAMTQEFSWQRSALEYE--VMYKDVCGIKEPSPDVAEVEKFSYGQSADP 478          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HAEIN (Glycogen synthase OS=Haemophilus influenzae GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 317
            D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T   + + +      +     A+   ++RA A +   +A A +  + M QD SW+  A+++
Sbjct:  368 DVILVPSRFEPCGLTQLYGLQYGTLPLVRKTGGLADTVVDS-TSESIKARTATGFVFESATPEALRHCLQRAFALWQKPRAWAMVRTDAMEQDFSWRKAAEQY 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HAEI8 (Glycogen synthase OS=Haemophilus influenzae (strain 86-028NP) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 317
            D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T   + + +      +     A+   ++RA A +   +A A +  + M QD SW+  A+++
Sbjct:  368 DVILVPSRFEPCGLTQLYGLQYGTLPLVRKTGGLADTVVDS-TSESIKARTATGFVFESATPEALRHCLQRAFALWQKPRAWAMVRTDAMEQDFSWRKAAEQY 469          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_KLEP71.014e-1137.84Glycogen synthase OS=Klebsiella pneumoniae subsp. ... [more]
GLGA_EDWI91.014e-1140.20Glycogen synthase OS=Edwardsiella ictaluri (strain... [more]
GLGA_ALHEH1.014e-1137.19Glycogen synthase OS=Alkalilimnicola ehrlichei (st... [more]
GLGA_THELT1.325e-1138.10Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
GLGA_ROSDO1.325e-1136.79Glycogen synthase OS=Roseobacter denitrificans (st... [more]
GLGA_RALSO1.325e-1138.94Glycogen synthase OS=Ralstonia solanacearum GN=glg... [more]
GLGA_PROMS1.325e-1136.62Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PROM21.325e-1135.92Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_HAEIN1.325e-1137.86Glycogen synthase OS=Haemophilus influenzae GN=glg... [more]
GLGA_HAEI81.325e-1137.86Glycogen synthase OS=Haemophilus influenzae (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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