FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_GEOTN (Glycogen synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEE 323
            AD  L+PS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+       EG  GF   +F+             +  T+RRAL+ Y   ++ E + +  M  D SW+  A ++++
Sbjct:  368 ADLFLMPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQSYNEITKEG-NGFSFTNFNAH----------DMLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQ 469          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            A+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  340 AEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRGG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_NITEC (Glycogen synthase OS=Nitrosomonas eutropha (strain C91) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 320
            D  L+PSRFEPCGL Q+++  YGT P+V +TGGL+DTV         ++  +GF     + D          +    ++RA+  Y  T+    + +NGM +D SW+  A  ++
Sbjct:  384 DCFLMPSRFEPCGLNQMYSQHYGTPPVVHATGGLMDTVVDLTPETLADKSASGFHFHEMTAD----------SFMEGIKRAINAYHNTRLWKNLQRNGMQKDFSWQASASAYQ 486          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_JANSC (Glycogen synthase OS=Jannaschia sp. (strain CCS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 317
            D IL+PSRFEPCGL QL+ +RYGT+P+VA TGGL DTV            +   +   P+   A++    R    Y   +    M++N M Q + W   A ++
Sbjct:  361 DCILVPSRFEPCGLTQLYGLRYGTLPLVALTGGLADTVINASPAALARRVATGIQ-FSPITAEALANAFSRLCDLYADRKTWTAMVRNAMKQPVGWDMSASRY 462          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HALHL (Glycogen synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCGL QL+++RYGT P+V  TGGL DTV +     Q G+ F +        D AA++  V RALA +  +     ++  GMA   SW   A+ +++
Sbjct:  366 SDLFLMPSRFEPCGLNQLYSLRYGTPPVVYPTGGLADTVVDVDAHPQSGNGFHLAAS-----DGAALAAAVERALAHWQDRPTWHAIQARGMAGTYSWAASAQAYQD 467          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLCV (Glycogen synthase OS=Chlamydophila caviae GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 146
            AD I IPS FEPCGL QL  MRYGTVP+V STGGL DTV  G  GF
Sbjct:  372 ADMICIPSHFEPCGLTQLIGMRYGTVPLVRSTGGLADTVVTGINGF 417          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLAB (Glycogen synthase OS=Chlamydophila abortus GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 146
            AD I IPS FEPCGL QL  MRYGTVP+V STGGL DTV  G  GF
Sbjct:  372 ADMICIPSHFEPCGLTQLIGMRYGTVPLVRSTGGLADTVAAGVNGF 417          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_BACSU (Glycogen synthase OS=Bacillus subtilis GN=glgA PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSE 356
            +D  L+PS+FEPCGL QL A++YG +PIV  TGGL DTV     EEG   GF   +F+             +  T+ RAL+ Y  Q +   ++K  M  D SW   AK+++     +  +G +
Sbjct:  369 SDMFLMPSKFEPCGLGQLIALQYGAIPIVRETGGLYDTVRAYQEEEGTGNGFTFSAFNAH----------DLKFTIERALSFYCQQDVWKSIVKTAMNADYSWGKSAKEYQRIFEQVTRSGRD 481          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            +D  L+PSR+EPCGL Q+ AMRYGT+P+V  TGGL DTV+E    F   +   +    +  +   +   V +A+  Y  + L  ++M N M  D SW   A+++
Sbjct:  359 SDMFLMPSRYEPCGLGQMFAMRYGTIPVVRFTGGLRDTVKE----FNPETLEGNGFGFEEYNPDKLLEAVEKAIKIYENKTLWNQLMLNAMNTDCSWDKSAREY 458          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_HAES1 (Glycogen synthase OS=Haemophilus somnus (strain 129Pt) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWE 320
            D IL+PSRFEPCGL QL+ ++YGT+P+V STGGL DTV +  +   + +        +  DV  +   +  A   +   +  E ++ N M QD SW+  AK ++
Sbjct:  368 DVILVPSRFEPCGLTQLYGLKYGTLPLVRSTGGLADTVIDS-SSENIKARHATGFVFNDADVGGLCYGIDSAFTLWRKPSQWESVIVNAMEQDFSWQTSAKGYQ 470          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_GEOTN1.325e-1138.94Glycogen synthase OS=Geobacillus thermodenitrifica... [more]
GLGA_THET81.730e-1140.00Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_NITEC1.730e-1133.63Glycogen synthase OS=Nitrosomonas eutropha (strain... [more]
GLGA_JANSC1.730e-1136.89Glycogen synthase OS=Jannaschia sp. (strain CCS1) ... [more]
GLGA_HALHL1.730e-1140.19Glycogen synthase OS=Halorhodospira halophila (str... [more]
GLGA_CHLCV1.730e-1171.74Glycogen synthase OS=Chlamydophila caviae GN=glgA ... [more]
GLGA_CHLAB1.730e-1171.74Glycogen synthase OS=Chlamydophila abortus GN=glgA... [more]
GLGA_BACSU1.730e-1136.59Glycogen synthase OS=Bacillus subtilis GN=glgA PE=... [more]
GLGA_KOSOT2.260e-1137.50Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
GLGA_HAES12.260e-1137.50Glycogen synthase OS=Haemophilus somnus (strain 12... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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