FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTR (Glycogen synthase OS=Chlamydia trachomatis GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 245
            AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV  G  GF            +P D       +  A+ TY T
Sbjct:  373 ADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGFSF---------FNPHDFYEFRNMLSEAVTTYRT 442          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTA (Glycogen synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 245
            AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV  G  GF            +P D       +  A+ TY T
Sbjct:  373 ADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGFSF---------FNPHDFYEFRNMLSEAVTTYRT 442          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT-VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPG 362
            D +L+PSRFEPCGL Q +A RYGTVP+  +TGGL DT V+ G+     G    +    +  +V A    V RA+  Y  +     ++K   AQD  W   A  + +   +L   G   G
Sbjct:  374 DMLLMPSRFEPCGLTQFYAFRYGTVPVAHATGGLADTLVDTGYDTLMTG--KANGFVFEHSNVGAFQWAVERAVGLYAKKDQWTRIVKACNAQDFGWGRSAGLYRDLYKSLTGNGGGKG 490          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_EXISA (Glycogen synthase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT-YGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCGL QL +MRYGT+PIV  TGGL DTV       +EG TGF   +++             +  T+ +A+   Y  +    ++   M  D SWK  AK++ E
Sbjct:  370 SDAFLMPSRFEPCGLSQLISMRYGTLPIVRETGGLRDTVKPYNEFTQEG-TGFGFMNYNAH----------EMLATIEKAIRVFYEKENWHALVHQAMTADYSWKQSAKQYRE 471          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ENT38 (Glycogen synthase OS=Enterobacter sp. (strain 638) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQ-MGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            +D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T  + +        A +  +  ++   +RRA   +   +L   + +  MA D SW   A+ + +    L+
Sbjct:  367 SDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD--TSLENLADGIATGFAFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWHVAAQSYRDLYQRLK 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTB (Glycogen synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 245
            AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV  G  GF            +P D       +  A+ TY T
Sbjct:  373 ADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGFSF---------FNPHDFYEFRNMLLEAVTTYRT 442          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLT2 (Glycogen synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 245
            AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV  G  GF            +P D       +  A+ TY T
Sbjct:  373 ADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGFSF---------FNPHDFYEFRNMLLEAVTTYRT 442          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CHLP8 (Glycogen synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            D +++PSR E CG+ Q+ AM YGTVPI  + GG+V+T+EE      TGF    ++ +          A++  +  AL+ +   +  AE+M+ GM +D SW   A+++ E
Sbjct:  383 DMLIMPSRIESCGMKQMFAMNYGTVPIAYAGGGIVETIEEVSGDKGTGFVFTDYTAE----------ALTAKLGEALSMFDDKERWAELMREGMERDFSWSASAEQYAE 481          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_ANATD (Glycogen synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWE---ETLLN 335
            +D  L+PS  EPCG+ QL AMRYG+VPIV  TGGL DTV+    FTG   G SF+      DP ++ A   T++ AL+ Y  +     ++   M QD SW   A +++   E+LLN
Sbjct:  369 SDMYLMPSLTEPCGISQLIAMRYGSVPIVRETGGLKDTVKPYNQFTGEGWGFSFA----NYDPAELFA---TIKYALSIYNDKNQWRNIVHQAMTQDNSWNASAYEYQKVYESLLN 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_YERE8 (Glycogen synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWK 299
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +      +   S      D  D  A+   +RRA   +   +    + ++ M  D  W+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRHTGGLADTVVDCALE-NLADGSASGFVFDECDAQALVRAIRRAFVLWSRPKHWRHVQRHAMGLDFGWQ 463          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_CHLTR2.260e-1146.84Glycogen synthase OS=Chlamydia trachomatis GN=glgA... [more]
GLGA_CHLTA2.260e-1146.84Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_MAGSA2.951e-1136.13Glycogen synthase OS=Magnetospirillum magneticum (... [more]
GLGA_EXISA2.951e-1138.94Glycogen synthase OS=Exiguobacterium sp. (strain A... [more]
GLGA_ENT382.951e-1134.51Glycogen synthase OS=Enterobacter sp. (strain 638)... [more]
GLGA_CHLTB2.951e-1146.84Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLT22.951e-1146.84Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLP82.951e-1134.86Glycogen synthase OS=Chlorobaculum parvum (strain ... [more]
GLGA_ANATD2.951e-1142.24Glycogen synthase OS=Anaerocellum thermophilum (st... [more]
GLGA_YERE83.855e-1137.76Glycogen synthase OS=Yersinia enterocolitica serot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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