FC929167

Overview
NameFC929167
Unique NameFC929167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNL 338
            D  L+PS FEPCGL Q++++RYGT+P+V + GGL DTV+E      G     F     + D +D+ A    + RAL  Y   A  + ++ N M +D SW+  AK +E    NL
Sbjct:  372 DIFLMPSIFEPCGLNQMYSLRYGTLPVVHAVGGLKDTVQERPLDNPGEDANGFVF--HSPDALDLHA---AILRALDAYRQPATWKQLQINAMNRDSSWEQSAKAYEAIYANL 479          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 338
            +D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW+  A  +++   +L
Sbjct:  368 SDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKKLYKSL 474          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_EUBE2 (Glycogen synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-----EG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            D  L+PS FEPCGL QL ++RYGTVPIV  TGGL DTVE     EG  TGF   +++   E +  V+ A       + +     +   +++  GM  D SW   A+K+EE
Sbjct:  372 DAFLMPSLFEPCGLSQLMSLRYGTVPIVRETGGLKDTVEPYNEYEGKGTGFSFANYNAH-EMLGIVNYA-------KDVYYNHKREWNKIVDRGMKTDFSWNSSARKYEE 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_DECAR (Glycogen synthase OS=Dechloromonas aromatica (strain RCB) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD  ++PSRFEPCGL Q++++RYGT PIV +TGGL DTV    E+         F +D +        A+  T+     T+  + L   + +NGM +D SW   A ++
Sbjct:  371 ADCFVMPSRFEPCGLNQMYSLRYGTPPIVRATGGLADTVVDVCEDTLADKSANGFVLDGDTPH-----ALWLTIEHVCRTWQDKKLWQRIQQNGMRRDFSWTHAANEY 473          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJA (Glycogen synthase 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLNL 338
            AD  L+PSRFEPCG+ Q+ AMRYG VPI   TGGLVDTV        +G+        D  +     T + RA   +        + K GMA D SW+  A ++    E ++NL
Sbjct:  359 ADVFLMPSRFEPCGISQMIAMRYGCVPIARRTGGLVDTVSHHIPSKGIGT----GYCFDRYEALDFYTCLARAWEAFQHKDTWQALQKRGMATDFSWQRSALEYLRLYELIMNL 468          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA2_AGRT5 (Glycogen synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT--------VEEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            +DFI+ PSRFEPCGL QL+A+RYG +PIV+ TGGL +T        +E G  TGFQ           +P +   +   + RA++ Y  + L   +    M  + SW   A ++
Sbjct:  363 SDFIIQPSRFEPCGLTQLYALRYGALPIVSRTGGLAETIIDANDAAIEAGVATGFQF----------EPANEDDLRAALERAISAYNDRELFRRLQTQAMQANFSWDKSAAQY 465          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNY3 (Glycogen synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 51/140 (36.43%), Postives = 71/140 (50.71%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVA 407
            AD  L+PSRFEPCGL QL AMRYG +PIV  TGGLVDTV       E  TG+    +       +P+D     T + RA   +  +A   ++ +  M  D SW   A ++ +      V G       EE++P+ +E +A
Sbjct:  348 ADVFLMPSRFEPCGLSQLMAMRYGCIPIVRRTGGLVDTVSFYDPINEAGTGYCFDRY-------EPLD---CFTAMVRAWEGFRFKADWQKLQQRAMRADFSWYRSAGEYIKVYKG--VVGKP-----EELSPMEEEKIA 470          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA1_NITOC (Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/114 (35.09%), Postives = 57/114 (50.00%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 317
            AD +++PS +EPCGL Q+ AM+YGTVPIV   GGL DTV +            GF    F+ +           +   + RA+  +    Q   E+M+NGM  D SW  P + +
Sbjct:  374 ADMLIVPSIYEPCGLTQMIAMKYGTVPIVRHVGGLADTVFDANYAHKPYHERNGFVFHDFNHE----------GIEAALHRAIGLWYEYPQYFRELMENGMRYDFSWNHPGQHY 477          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_STRSV (Glycogen synthase OS=Streptococcus sanguinis (strain SK36) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 338
            +D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTVE         TGF   +FS             ++ T + AL  Y    +A   + +  M +D SW   +K + +   +L
Sbjct:  368 SDIFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVEPYNVYTGKGTGFSFNNFS----------GYWLTWTFKEALKLYADDKEAWKSLQEQAMERDFSWDTASKAYSDLYQSL 475          
BLAST of FC929167 vs. ExPASy Swiss-Prot
Match: GLGA_STRGC (Glycogen synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA--LATYGTQALAEMMKNGMAQDLSW 296
            +D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTVE       +G TGF   +FS             +S T + A  L T+  +A   M +  M +D SW
Sbjct:  368 SDIFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVEPYNVYTGQG-TGFSFNNFS----------GYWLSWTFKEALNLYTHDKEAWKSMQEQAMERDFSW 461          
The following BLAST results are available for this feature:
BLAST of FC929167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_CELJU3.855e-1138.94Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_BACCQ3.855e-1139.82Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_EUBE25.034e-1140.91Glycogen synthase OS=Eubacterium eligens (strain A... [more]
GLGA_DECAR5.034e-1137.04Glycogen synthase OS=Dechloromonas aromatica (stra... [more]
GLGA2_SYNJA5.034e-1138.60Glycogen synthase 2 OS=Synechococcus sp. (strain J... [more]
GLGA2_AGRT55.034e-1136.28Glycogen synthase 2 OS=Agrobacterium tumefaciens (... [more]
GLGA1_SYNY35.034e-1136.43Glycogen synthase 1 OS=Synechocystis sp. (strain P... [more]
GLGA1_NITOC5.034e-1135.09Glycogen synthase 1 OS=Nitrosococcus oceani (strai... [more]
GLGA_STRSV6.575e-1136.44Glycogen synthase OS=Streptococcus sanguinis (stra... [more]
GLGA_STRGC6.575e-1141.90Glycogen synthase OS=Streptococcus gordonii (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929167 ID=FC929167; Name=FC929167; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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