FC929216

Overview
NameFC929216
Unique NameFC929216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRSV (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus sanguinis (strain SK36) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.513e-17
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   64 VVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            ++ +FQPAEE   G   + E G       +  +GLHV P+L +G++A+  G L AG+   +    GKGGHAA P  + D ++AAS  I  +Q +VSR  DP++  VVT      G   NVI ++
Sbjct:  119 LLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAGTCEVKLTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIEGAVVTFGSLHAGTTNNVIAET 242          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_LACLA (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. lactis GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPD 426
            +T+ LG  + + E +   +  ++ +FQPAEE   G   + +A   E    +  +GLHV P+L +G++A+    L AG+   E    G GGHAA P  + D ++AA+  I  +Q +VSR  DPL S VVT  K + G   N+I +
Sbjct:   99 MTVALGLLEKMSESQP--RDNLLFLFQPAEENEAGGKLMYDARAFENWLPDEFYGLHVRPDLKVGDIATNQHTLFAGTCEVELSFIGTGGHAAFPHTANDALVAAAYFITQVQTIVSRNVDPLASAVVTFGKMEAGTTNNIIAE 240          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: CAAL4_RHOSR (Carboxylate-amine ligase RHA1_ro04240 OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro04240 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGG-GGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            TML+GAA +L ++    +  V LVFQPAEE   GGA   + AG L+ V+ IF LH DP+L +G++++R GP+ + +      +   GGH A P  + D I A + ++  L  ++ R  D   + V+T  K   G   N +P+S
Sbjct:  514 TMLMGAASVLTKYPPPTR--VRLVFQPAEETTPGGAVDTIAAGALDGVSKIFALHCDPHLEVGKLSTRTGPITSSNDSVTVRLWSAGGHTARPHLTGDLIHATAVLVTGLASVLDRRIDARTATVLTWGKVAAGQVANSVPES 654          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRSY (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 05ZYH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.371e-17
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            +T+ LG  + + E  ++ +  ++ +FQPAEE   G   + EAG       +  +GLHV P+L +G++A+    L AG+   +    GKGGHAA P  + D ++AAS  +  +Q +VSR  DP++  VVT      G   NVI ++
Sbjct:  100 MTIALGLLEKMAE--QQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAGTCEVKIRFTGKGGHAAFPYTANDALVAASYFVTQVQSVVSRNVDPIEGAVVTFGSMHAGTTNNVIAET 242          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRS2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 98HAH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.371e-17
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            +T+ LG  + + E  ++ +  ++ +FQPAEE   G   + EAG       +  +GLHV P+L +G++A+    L AG+   +    GKGGHAA P  + D ++AAS  +  +Q +VSR  DP++  VVT      G   NVI ++
Sbjct:  100 MTIALGLLEKMAE--QQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAGTCEVKIRFTGKGGHAAFPYTANDALVAASYFVTQVQSVVSRNVDPIEGAVVTFGSMHAGTTNNVIAET 242          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRTD (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dapL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            K  ++ +FQPAEE   G   + E G       +  +GLHV P+  +G++A+    L AG+        GKGGHAA P  + D ++AAS  I  +Q +VSR  DP+   VVT   F  G   NVI ++
Sbjct:  117 KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIQGGVVTFGSFHAGTTNNVIAET 243          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRT2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dapL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            K  ++ +FQPAEE   G   + E G       +  +GLHV P+  +G++A+    L AG+        GKGGHAA P  + D ++AAS  I  +Q +VSR  DP+   VVT   F  G   NVI ++
Sbjct:  117 KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIQGGVVTFGSFHAGTTNNVIAET 243          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRT1 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dapL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            K  ++ +FQPAEE   G   + E G       +  +GLHV P+  +G++A+    L AG+        GKGGHAA P  + D ++AAS  I  +Q +VSR  DP+   VVT   F  G   NVI ++
Sbjct:  117 KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIQGGVVTFGSFHAGTTNNVIAET 243          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: DAPL_STRMU (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus mutans GN=dapL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDS 429
            K  ++ +FQPAEE   G   + E G     + +  +GLHV P+  +G++A+    L AG+        GKGGHAA P ++ D ++AAS  I  +Q +VSR  DP++  VVT      G   NVI ++
Sbjct:  117 KNNLLFLFQPAEENEAGGMLMYEDGAFGNWQPDEFYGLHVRPDFKVGDIATNTSTLFAGTCEVFITFKGKGGHAAFPHNANDALVAASYFITQVQTIVSRNVDPIEGGVVTFGSMHAGTTNNVIAET 243          
BLAST of FC929216 vs. ExPASy Swiss-Prot
Match: Y4TI_RHISN (Uncharacterized hydrolase y4tI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01500 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 44/140 (31.43%), Postives = 69/140 (49.29%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGGG-GAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVI 420
            ++ +G A      R    G + + FQPAEE    G   VLE  +LE  +   G HV P++ +G+  +R G +   S  F+  + G   H + P + ID I  A+  +  +Q ++SRE    D  V+T+    GG A N+I
Sbjct:  119 SIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDDRSVITIGTIHGGEATNII 258          
The following BLAST results are available for this feature:
BLAST of FC929216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
DAPL_STRSV1.513e-1737.90Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_LACLA1.976e-1735.42Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
CAAL4_RHOSR2.581e-1736.36Carboxylate-amine ligase RHA1_ro04240 OS=Rhodococc... [more]
DAPL_STRSY3.371e-1734.48Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRS23.371e-1734.48Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRTD4.403e-1737.01Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRT24.403e-1737.01Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRT14.403e-1737.01Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRMU7.510e-1736.22Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
Y4TI_RHISN2.416e-1531.43Uncharacterized hydrolase y4tI OS=Rhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DA08RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929216 ID=FC929216; Name=FC929216; organism=Citrus clementina; type=EST; length=429bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAG
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGTGACAGTTGCAAAATTTCAAGGAG
GTGGTGCATTCAATGTCATTCCAGATTCA
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