FC929217

Overview
NameFC929217
Unique NameFC929217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 61/206 (29.61%), Postives = 90/206 (43.69%), Query Frame = 1
Query:  202 GCAGVGIL----------GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            GCA V +           GI   +G  + V+VY    ISG H+NPAVT       +    R   Y  AQ  G+ +    ++A        + G A   +D  S    LA E I TF L++ V       R+     +  LA L +G  V +  L   PI+G  +NPAR++G A+I  +   +   W++  GP  GA   A+ +  I
Sbjct:   70 GCAAVAVNKRTGGTVTFPGICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQS----LAMEFIITFYLMFVVSGVATDNRA-----IGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGR---YTGIWVYIAGPVFGAVAGAWAYNLI 263          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  217 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY------NK-DKAWDDQWLFWVGPFIGAAIA 768
            G + I   +G  + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K +Y       N LA  +STG         L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR LG  +++      NK D  W   W+  VGP IGAA+A
Sbjct:   37 GWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 70/219 (31.96%), Postives = 93/219 (42.47%), Query Frame = 1
Query:  223 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA--------------EIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSLG----AAVIYNKDKA-----WDDQWLFWVGPFIGAAIAAFYHPFILRAG 801
            L  AW FG M+ V  Y   GISGGHINPAVT  + + RK    +  +Y+VAQ +GA  G  +   +  S  T + GG +      +TG  L                E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR LG    A++I     A     W   W  W GP  G    A  +   +  G
Sbjct:  384 LSFAWGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTT--ATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAGGIAGALIYDIFIFTG 592          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: PDUF_SALTY (Propanediol diffusion facilitator OS=Salmonella typhimurium GN=pduF PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 69/223 (30.94%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  208 AGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN---------ELADGYSTGVGLA--------AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFW-----------VGPFIGA-AIAAFYHPFI 789
            A +G+  I   +G  I + VY TAGISGGH+NPAVT  L+L       + + Y++AQ  GA  G  L      S +T +    +         +LA  +ST    A         E++ T +L+  + + TD            LAPL IG  V ++  +T P+TG  +NPAR  G   ++     W +  +             V P IGA A AA Y  FI
Sbjct:   35 ASLGLWEICIIWGLGISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLAYVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGMIMALTDDGNGIPKG---PLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPK-LFTWLAGWGNMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFI 253          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 54/204 (26.47%), Postives = 90/204 (44.12%), Query Frame = 1
Query:  187 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            A N      V + GIA  +G  + VLVY    ISG H NPAVT       +  L +   Y+++Q +G+      ++           G  +       +G  L +   E I TF L++ +       R+     +  LA L +G  V +  +   P++G  +NP RSLG A++Y+    +   W++ V P +GA   A+ +  +
Sbjct:   73 AVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNRA-----IGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAMVYS---CYRGLWIYIVSPIVGAVSGAWVYNMV 268          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 54/189 (28.57%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            GI   +G ++ V++Y T  ISG H NPAVT    + R+    +  +Y+ AQ  G+ ++ + L   F+ +    +G          S    L AEII +F+L++ +       R+     V  LA + +G  + +      PI+G  +NPARSLG A++      +   W++ VGP +G     F +  I
Sbjct:   77 GICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG-----TTPADSPARALVAEIIISFLLMFVISGVATDNRA-----VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMG---VYKHIWVYIVGPVLGVISGGFVYNLI 252          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: GLPF_BACSU (Glycerol uptake facilitator protein OS=Bacillus subtilis GN=glpF PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 57/216 (26.39%), Postives = 92/216 (42.59%), Query Frame = 1
Query:  205 CAGV----------GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY-------NKDKAWDDQWLFWVGPFIGAAIAAFYH 780
            CAGV          G + + + +G  + +  Y   GISG H+NPA+T  L            +Y+ AQ +GAI G  ++      ++      A +L   +STG         + +E+IGTFVLV  + +         +     L PL +GF +  + ++    TG  INPAR LG  + +            W   W+  VGP +G +    ++
Sbjct:   22 CAGVNLKKSLSFQSGWIVVVFGWGLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYLHYLPHWKSTDDPAAKLG-VFSTGPSIPHTFANVLSEVIGTFVLVLGILAI------GANQFTEGLNPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVGPILGGSFGGVFY 230          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 64/228 (28.07%), Postives = 97/228 (42.54%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            S YR L AEF+             I    +TD A+ + GCA         + G  + +++  T  ISG H+NPAVT      +        +Y+ AQ + ++S    +KA    +     GG      G S     A E I +F L++ V +     R+     V  LA + +G  V +  L   P T   +NP R+LG A+  N  +A    W++   P +GA I A
Sbjct:   77 SLYRKLGAEFVGTLILIFAGTATAI-VNQKTDGAETLIGCAA--------SAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAV---FEPTMSGGVTVPTVGLSQ--AFALEFIISFNLMFVVTAVATDTRA-----VGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRA---IWVYLTAPILGALIGA 282          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 57/194 (29.38%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  223 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG-----LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHPFI 789
            LG + A G ++ V++Y T  ISG H+NPAVT      R    ++   Y  AQ  GA+    ++KA                  G +T  G     L  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+L  AV  N    +   W++++GP IG    A+ + +I
Sbjct:   85 LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPI----------AVIGTTTPSGPHWHALLIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVIGTLSGAWVYTYI 260          
BLAST of FC929217 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.973e-13
Identity = 68/224 (30.36%), Postives = 97/224 (43.30%), Query Frame = 1
Query:  217 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRY----------GG----------------GANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY------NKDKA-WDDQWLFWVGPFIGAAIA 768
            G L IA+ +G  +    Y +  +SG H+NPAVT G+ + +         Y   Q LGA+ G  LV     +YY ++          GG                GA  +   +STG         LA EIIGTFVL+  + +      +   + + +L  L  GF V  + L+    TG  INP R LG  +++      NK  + W   W+  VGP IG AIA
Sbjct:   39 GWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWV---AYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIGGAIA 255          
The following BLAST results are available for this feature:
BLAST of FC929217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
NIP13_ORYSJ4.693e-1429.61Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
GLPF_STRPN6.129e-1432.32Glycerol uptake facilitator protein OS=Streptococc... [more]
YFF4_YEAST1.045e-1331.96Uncharacterized membrane protein YFL054C OS=Saccha... [more]
PDUF_SALTY1.045e-1330.94Propanediol diffusion facilitator OS=Salmonella ty... [more]
NIP12_ARATH1.783e-1326.47Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
NIP41_ARATH2.329e-1328.57Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
GLPF_BACSU2.329e-1326.39Glycerol uptake facilitator protein OS=Bacillus su... [more]
NIP61_ARATH3.042e-1328.07Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP22_MAIZE3.042e-1329.38Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
GLPF_STRCO3.973e-1330.36Probable glycerol uptake facilitator protein OS=St... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929217 ID=FC929217; Name=FC929217; organism=Citrus clementina; type=EST; length=812bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCACCCATTCATCTTGAGAGCTGG
AGCTGTCAAGGC
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