FC929220

Overview
NameFC929220
Unique NameFC929220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: Y1253_STAAB (Uncharacterized hydrolase SAB1253 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1253 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.700e-13
Identity = 40/139 (28.78%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   49 ELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAF 459
            +L   VV +FQPAEE GGGA+++++AG  +K  + A+FG+HV+P    G    R   + A +  +   + G   H A  +       A  +V+  +  +     + L   +V +  F+ G A N +P +  + GT R +
Sbjct:  116 QLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEGIAVIRDEEITASATEYRFFLTGLSSHVADKEQGHSCGEALQHVLTQISQIQQFHLNGLKRNIVHIGHFKAGEAINTVPSNGYLEGTIRTY 254          
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: IAAH_ENTAG (Indole-3-acetyl-aspartic acid hydrolase OS=Enterobacter agglomerans GN=iaaH PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   13 LGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLI 438
            LG A +L+++ + L G + L+FQPAEEG  GA  ++ AGV++ V+    +H+   +P G V       +A +  F+A+  G   HA   P+   + +LAA+   ++L  +    A    +  V V   Q G   NV+P   L+
Sbjct:  158 LGLAHVLKQYADRLHGVIKLIFQPAEEGTRGARAMVAAGVVDDVDYFTAIHIGTGVPAGTVVCGSDNFMATTK-FDALFTGVAAHAGGKPEDGRNALLAAAQAAIALHAIAPHSA---GASRVNVGVMQAGTGRNVVPSGALL 296          
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: Y968_STAEQ (Uncharacterized hydrolase SERP0968 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0968 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 39/141 (27.66%), Postives = 69/141 (48.94%), Query Frame = 1
Query:   43 REELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAF 459
            + EL   VV +FQPAEE GGGA+++++AG  +K  + A+FG HV+P    G++  R   + A +  +   + G   H A  +          +V+  +  +     + L   ++ +  F+ G A N +P    + GT R +
Sbjct:  114 KSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVADKEQGHSCGEGLQHVLSQIGQIQQFHLNGLKRNIIHMGHFEAGEAINTVPSHGYLEGTIRTY 254          
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: Y1078_STAES (Uncharacterized hydrolase SE_1078 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1078 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 39/141 (27.66%), Postives = 69/141 (48.94%), Query Frame = 1
Query:   43 REELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAF 459
            + EL   VV +FQPAEE GGGA+++++AG  +K  + A+FG HV+P    G++  R   + A +  +   + G   H A  +          +V+  +  +     + L   ++ +  F+ G A N +P    + GT R +
Sbjct:  114 KSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVADKEQGHSCGEGLQHVLSQIGQIQQFHLNGLKRNIIHMGHFEAGEAINTVPSHGYLEGTIRTY 254          
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: ABGA_ECOLI (Aminobenzoyl-glutamate utilization protein A OS=Escherichia coli (strain K12) GN=abgA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   13 LGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLI 438
            LG A  L++    L G + L+FQPAEEG  GA  +++AGV++ V+    +H+   +P G V       +A +  F+A   G   HA A P+   + +LAA+   ++L H ++  ++   +  V V   Q G   NV+P S L+
Sbjct:  158 LGLAHTLKQFESGLHGVIKLIFQPAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTVVCGSDNFMATTK-FDAHFTGTAAHAGAKPEDGHNALLAAAQATLAL-HAIAPHSE--GASRVNVGVMQAGSGRNVVPASALL 296          
BLAST of FC929220 vs. ExPASy Swiss-Prot
Match: Y1513_STAHJ (Uncharacterized hydrolase SH1513 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1513 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 41/141 (29.08%), Postives = 68/141 (48.23%), Query Frame = 1
Query:   55 KGT----VVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAF 459
            KGT    VV +FQPAEE GGGA+++++AG      + A+FG+HV+P    G+V  R   + A +  +   + G   H A  +       A  +V+  +  +     + L   +V +  F+ G A N +     + GT R +
Sbjct:  114 KGTLPHNVVFIFQPAEETGGGANRLIKAGAFNNYPIEAVFGIHVNPFADEGQVVIRDEEITASATEYRFFLKGLSSHVADKEQGHSCGEALLHVLNQVGQIQQYHLNGLKRNIVHMGHFEAGEAINTVASHGYLEGTIRTY 254          
The following BLAST results are available for this feature:
BLAST of FC929220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
Y1253_STAAB3.700e-1328.78Uncharacterized hydrolase SAB1253 OS=Staphylococcu... [more]
IAAH_ENTAG8.243e-1330.77Indole-3-acetyl-aspartic acid hydrolase OS=Enterob... [more]
Y968_STAEQ1.077e-1227.66Uncharacterized hydrolase SERP0968 OS=Staphylococc... [more]
Y1078_STAES1.077e-1227.66Uncharacterized hydrolase SE_1078 OS=Staphylococcu... [more]
ABGA_ECOLI5.343e-1232.17Aminobenzoyl-glutamate utilization protein A OS=Es... [more]
Y1513_STAHJ4.523e-1129.08Uncharacterized hydrolase SH1513 OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DA12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929220 ID=FC929220; Name=FC929220; organism=Citrus clementina; type=EST; length=466bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAG
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGTGACAGTTGCAAAATTTCAAGGAG
GTGGTGCATTCAATGTCATTCCAGATTCAGTATTAATTGGAGGCACTTTC
CGGGCCTTTTCAAAGG
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