FC929223

Overview
NameFC929223
Unique NameFC929223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8818 contig Ccv1_Contig8818:498..1277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929223 vs. ExPASy Swiss-Prot
Match: SPS2_CRAPL (Sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            LID+Y L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  +  A  L+    K  ++ + W++    GLK I   ++W  + +  LT
Sbjct:  557 LIDRYDLYGQVAF-PKHHKQSDVPEIYRLASKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQDAIANALL----KLVSEKNLWNECRKNGLKNI-HLFSWPEHCRTYLT 683          
BLAST of FC929223 vs. ExPASy Swiss-Prot
Match: SPS_VICFA (Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 49/146 (33.56%), Postives = 71/146 (48.63%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTW----KIYSQRLLTLTGVYGFWK 458
            LID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  IDP+  +  A+ L+    K  ++   W K    GLK I   ++W    K Y  ++ T    +  W+
Sbjct:  537 LIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLIDPHDEKSIADALL----KLVSNKQLWAKCRQNGLKNI-HLFSWPEHCKTYLSKIATCKPRHPQWQ 676          
BLAST of FC929223 vs. ExPASy Swiss-Prot
Match: SPS1_CITUN (Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 48/135 (35.56%), Postives = 66/135 (48.89%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTW----KIYSQRL 425
            LID+Y L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  +  A+ L+    K  A    W +    GLK I   ++W    K Y  R+
Sbjct:  536 LIDKYDLYGQVAY-PKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALL----KLVAGKQLWARCRQNGLKNI-HLFSWPEHCKTYLSRI 664          
BLAST of FC929223 vs. ExPASy Swiss-Prot
Match: SPS1_CRAPL (Sucrose-phosphate synthase 1 OS=Craterostigma plantagineum GN=SPS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   33 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 431
            +ID+Y L G   +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP++ E  A+ L+    K  A+   W K    GLK I   ++W  + +  L+
Sbjct:  535 MIDKYDLYGLVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGILVDPHNQESIADALL----KLVAEKHLWAKCRANGLKNI-HLFSWPEHCKSYLS 661          
The following BLAST results are available for this feature:
BLAST of FC929223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SPS2_CRAPL2.392e-1234.59Sucrose-phosphate synthase 2 OS=Craterostigma plan... [more]
SPS_VICFA3.124e-1233.56Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE... [more]
SPS1_CITUN6.960e-1235.56Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=S... [more]
SPS1_CRAPL9.091e-1233.83Sucrose-phosphate synthase 1 OS=Craterostigma plan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AD03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929223 ID=FC929223; Name=FC929223; organism=Citrus clementina; type=EST; length=781bp
GGCACGAGGCTGAAATGAAGAAGATGTATTCCCTCATTGATCAATACAAA
TTGAATGGCCAGTTCCGATGGATCTCATCTCAGATGAATCGGGTCAGGAA
CGGTGAATTGTACCGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAAC
CTGCACTGTATGAGGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGT
GGATTGCCAACATTTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGT
TAACGGGAAATCTGGCTACCACATTGATCCTTACCATGGTGAGCAGGCTG
CTGAGATCCTTGTTGACTTCTTTGAGAAGTGCAAGGCAGATCCCTCATAC
TGGGACAAGATATCACTGGGTGGCCTGAAGCGTATTGAAGAGAAGTATAC
ATGGAAAATTTACTCTCAGAGGCTTCTGACCCTGACTGGAGTCTATGGGT
TCTGGAAACATGTATCTAACCTTGATCGTCTTGAGAGCCGTCGATACCTT
GAAATGTTTTATGCTCTCAAGTACCGTAAGCTGGCTGAATCTGTTCCTCT
GGCTGTGGAGGAGTAAATGGACATTGAGGGAAGCTCTCAGGGTGGTTGGT
CCGAGTGGAGGTTTCTTGAGTTGTGGAGAATAATGTCGCTTCCGGGATTG
CGATTGGACAAAGACTTTTTTCCCCCCGTTAAATTTTCTTTTTTCCAATT
TTTTTTTTGCCTTTTTGCATTTCTCAGCATTGTTTGTACTTTTGGGTGTT
CCACCCTCATCAATTCCATTATAGTTTGCGA
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