FC929238

Overview
NameFC929238
Unique NameFC929238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9256 contig Ccv1_Contig9256:11..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV + TAK Y
Sbjct:   89 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEY 142
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV Y+ AK +
Sbjct:   86 VVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQESFNNVKQWL+EIDRYA +NVNKLLVGNK DLTA +VVS + AK +
Sbjct:   86 VVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139
[Close]
BLAST of FC929238 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            IVYD+TD ESFNNVKQWL+EIDRYA+D+V KLLVGNKCDL  N+ V    A+ Y
Sbjct:   86 IVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAY 139
The following BLAST results are available for this feature:
BLAST of FC929238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAB1A_LYMST1.073e-1881.48Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTV1_VOLCA1.830e-1879.63GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPT1_PHYIN1.549e-1777.78Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1B_RAT2.237e-1675.93Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB2.237e-1675.93Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_PIG2.237e-1675.93Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_MOUSE2.237e-1675.93Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_HUMAN2.237e-1675.93Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN2.237e-1675.93Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPTM1_MAIZE3.817e-1670.37GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DB09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929238 ID=FC929238; Name=FC929238; organism=Citrus clementina; type=EST; length=690bp
GGCACGAGGTGTCTCCTCTGGTAGATTGTTTATGATGTGACAGACCAAGA
GAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTATGCTA
GTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCACTGCA
AATAAGGTTGTCTCGTACGAAACAGCCAAGGTATATCTACTTCTCTACAC
TGGCATTTTCTTTTTTTACCCCTCCCCTTAACAAGGTTCAAGCCACTTCC
TCCCCCCTCCAAATTATGTGTCAAAGTAAATTTTGTATAATGATCCGAAA
TTGCTATTTCCACCATTCTTAATGGTGAACCTTTATGTCGATTCGTATTG
CATTCATCAAGATAGTCTTTAGTTGCTGGCCAGTAAAGGCACTAGAGTTT
GAGTTGGATAAAAAGCCTTCCTTCAAAGATTATAACTCGAAGACTCCTTA
CCTTAGGAGCTGGATAAGTGATACATCTGGCGAGCATTCTGTTGACCCCT
TGTACTCTTCTTCTTTATTAGGCATTTGCAGATGAAATTGGAATACCTTT
CATGGAAACTAGTGCAAAAGATTCTACCAACGTGGAACAGGCATTCATGG
CCATGGCTGCTTCAATCAAGGATAGGTATTGATGCATATTTGCTTTCTAT
ATTAAACGCGAAATAGATTGATAGGAGTATTGTGTTTTGC
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