FC929261

Overview
NameFC929261
Unique NameFC929261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12949 contig Ccv1_Contig12949:141..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRZT (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRZP (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain P1031) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRZJ (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain JJA) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRPN (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRPJ (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRPI (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRP7 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain 70585) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_DESRM (Glucose-1-phosphate adenylyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 62/241 (25.73%), Postives = 110/241 (45.64%), Query Frame = 1
Query:  157 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEPL------GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN----PAVLDRIELRPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIG 813
            A++L GG G+RL  LT  + KP V F  +  I+   +      G   V +   YQP  +  ++      + + K G   +     + +      GTA  +    + +     +   +L+ D I +  ++ M++FHK    +A+I V +V   E S +G++ T +   ++ +F EKPK+   N  + G+Y+ N     A L+  E  P S     K + P +   G ++FA    G+W D+G
Sbjct:    8 AMLLAGGQGSRLGVLTKKLAKPAVPFGGRYRIIDFTLSNCNNSGFDTVGVLTQYQPLALNTYIGIGSHWDLDRKNGGVTVLPPFVKEMGGEWYKGTANAIYQNIEFVDQYKPKYILILSGDHIYKMDYSLMLDFHKEKQADATIAVIEVPWQEASGFGIMNTAKD-ARIVEFEEKPKVPRSNLASMGVYIFNWELLKAYLEEDERNPRSSNDFGKNIIPLMLEAGQRMFAYPFKGYWRDVG 247          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 564
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: RMLA_XANCP (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris GN=rmlA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 50/185 (27.03%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 705
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV   ++  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEFDQH-GKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
The following BLAST results are available for this feature:
BLAST of FC929261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
GLGC_STRZT2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZP2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZJ2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPN2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPJ2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPI2.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP72.920e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_DESRM2.920e-1125.73Glucose-1-phosphate adenylyltransferase OS=Desulfo... [more]
EI2BG_HUMAN2.920e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_XANCP3.814e-1127.03Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DC11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929261 ID=FC929261; Name=FC929261; organism=Citrus clementina; type=EST; length=823bp
GCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCT
GTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTTGTTT
GCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACA
ATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTT
GACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGA
TCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTT
TTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATT
TGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCAC
TGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGAT
ACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCC
ATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCA
TCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACG
GAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATT
TGTTGGTAACAAAATTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTC
TTGATCGCATTGAGCTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCA
AAAATTGCTTTAGAAGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTG
GATGGACATTGGACAGCCGAGGG
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