FC929266

Overview
NameFC929266
Unique NameFC929266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 86/254 (33.86%), Postives = 130/254 (51.18%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKL----DEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWA-FHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSML---------EGSSNIPD 722
            +F   +   S L+HPN+V + G C+E  + LLVYEY+ + SL +A+   +     L+W +R +I +G+AR L +LH      I H D+KATN+LLD +L P+I+D GLA L        K   S       GY+APE+   G    K+D Y+ GV+ LE+++G+              + WA   LH   +L +++D  +   F+   A +   I  LCT A    RP +SE+V  L         E SS++ D
Sbjct:  457 QFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMH--DEVYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRIADCGLASLRPLTSNSVKLRASEIAIQNTGYIAPEHGQPGSSGTKSDTYALGVLLLELLTGRKAFDSSRPRGEQLLVKWASTRLHDRRSLEQMIDGGIAGTFSSRVASQYADIISLCTQAEKEFRPPVSEIVEALTALIQKQNKEASSSVAD 708          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.365e-31
Identity = 86/234 (36.75%), Postives = 131/234 (55.98%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEE-EKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLE 701
            +F  EI +++  QH NLV++ G   +GD L LVY YM N SL   L   + +   L+W +R KI  G A G+ FLHE      +HRDIK+ N+LLD     KISDFGLA+  E+  +T +++R+ GT  YMAPE AL G +T K+D+YSFGVV LEI++G   +    +      +          T+ + +D ++ ++ +    E M  +A  C +   + RP + +V  +L+
Sbjct:  229 QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE-DEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 455          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 81/231 (35.06%), Postives = 130/231 (56.28%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRS-GTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            EF  E+ ++  + H NL  + G   EGDQ+ L+YE+M N ++A  L G    Q  L+W  R +I L  A+GL +LH   +  IVHRD+K +N+LL+     K++DFGL++    E ++H+ST VAGT GY+ P       L  K+D+YSFGVV LE+++GK  +            DW   + RS   +  ++D ++  +F+     +++++AL   + + S RP M  +V
Sbjct:  609 EFRSEVEVLVRVHHVNLTALIGYFHEGDQMGLIYEFMANGNMADHLAG--KYQHTLSWRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSRSFHTESRSHVSTLVAGTPGYLDPLCFETNGLNEKSDIYSFGVVLLEMITGKTVIKESQTKRVHVS-DWVISILRSTNDVNNVIDSKMAKDFDVNSVWKVVELALSSVSQNVSDRPNMPHIV 836          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 87/244 (35.66%), Postives = 132/244 (54.10%), Query Frame = 3
Query:    6 FLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK---------LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPL-DWA-FHLHRSGTLMELVDPRLGSEFNKVEAERM--IKIALLCTNASPSLRPTMSEVVSML 698
            F  EI  +  ++H N+V++ G C   +  LL Y+Y+ N SL+  L G       ++W  R  + LG+A  LA+LH +    I+H D+KA NVLL     P ++DFGLA+         +D  + T+    +AG+ GYMAPE+A    +T K+DVYS+GVV LE+++GK+ +   PD      L  W   HL        L+DPRL    + +  E +  + +A LC +   + RP M +VV+ML
Sbjct:  799 FNSEIKTLGSIRHRNIVRLLGWCSNRNLKLLFYDYLPNGSLSSRLHGAGKGGC-VDWEARYDVVLGVAHALAYLHHDCLPTIIHGDVKAMNVLLGPHFEPYLADFGLARTISGYPNTGIDLAKPTN-RPPMAGSYGYMAPEHASMQRITEKSDVYSYGVVLLEVLTGKHPLD--PDLPGGAHLVKWVRDHLAEKKDPSRLLDPRLDGRTDSIMHEMLQTLAVAFLCVSNKANERPLMKDVVAML 1038          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.881e-31
Identity = 82/228 (35.96%), Postives = 115/228 (50.44%), Query Frame = 3
Query:   18 IAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAF-HLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSML 698
            +  +S ++H N+ ++ G C E    +LVYEY  N SL   L   +     L W  R +I LG AR + +LHE     ++H++IK++N+LLD DLNP++SD+GL+K       ++ T      GY APE       T K+DVYSFGVV LE+++G+              + WA   LH    L  + DP L   +      R   I  LC    P  RP MSEVV  L
Sbjct:  451 VMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSKPLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSKF------YLRTSQNLGEGYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEAL 672          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 89/243 (36.63%), Postives = 134/243 (55.14%), Query Frame = 3
Query:    6 FLYEIAMISCLQHPNLVKIHGCCVEGDQ--LLLVYEYMENNSLAHALFGG----ENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEE---KTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLME-LVDPRLGS--EFNKVEAERMIKIALLCTNASPSLRPTMSEVVSML 698
            F  E+  +  ++H +LVK+ G C    +   LL+YEYM+N S+   L       E  +  L+W  R +I +G+A+G+ +LH +    IVHRDIK++NVLLD ++   + DFGLAK+  E     T  +T  A + GY+APEYA     T K+DVYS G+V +EIV+GK     V  +          HL  +G+  + L+DP+L     F +  A ++++IAL CT  SP  RP+  +    L
Sbjct:  993 FSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRWVETHLEVAGSARDKLIDPKLKPLLPFEEDAACQVLEIALQCTKTSPQERPSSRQACDSL 1235          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: IRAK4_MOUSE (Interleukin-1 receptor-associated kinase 4 OS=Mus musculus GN=Irak4 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 85/237 (35.86%), Postives = 129/237 (54.43%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEE-EKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS 710
            +F  EI +++  QH NLV++ G   + D L LVY YM N SL   L   + +   L+W  R K+  G A G+ FLHE      +HRDIK+ N+LLD+D   KISDFGLA+      +T +++R+ GT  YMAPE AL G +T K+D+YSFGVV LE+++G   +    +      +          T+ +  D ++ S+ +    E M   A  C +   + RP +++V  +L+  S
Sbjct:  229 QFDQEIKVMATCQHENLVELLGFSSDSDNLCLVYAYMPNGSLLDRLSCLDGTP-PLSWHTRCKVAQGTANGIRFLHENHH---IHRDIKSANILLDKDFTAKISDFGLARASARLAQTVMTSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLELITGLAAVDENREPQLLLDIKEEIE-DEEKTIEDYTDEKM-SDADPASVEAMYSAASQCLHEKKNRRPDIAKVQQLLQEMS 458          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 84/239 (35.15%), Postives = 135/239 (56.49%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKL-----DEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTM-SEVVSMLE 701
            EFL E+ ++S L+HP++V + G C E     LVYEY+EN SL   +F  +N    L W +R ++   +A GLAFLH      IVHRD+K  N+LL+R+   KI+D GLAKL      +    + ++ +AGT+ Y+ PEY   G +  K+D+Y+FG++ L++++ +N    VP            +  + GTL E++D  + +++   E E + +I L C       RP + SEV+ +L+
Sbjct:  481 EFLKEVEVLSQLRHPHVVLLLGACPENG--CLVYEYLENGSLEEYIFHRKNKP-PLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVE---------NAVKKGTLTEMLDKSV-TDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLK 706          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: CCR35_ARATH (Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.615e-30
Identity = 85/240 (35.42%), Postives = 130/240 (54.17%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGD-QLLLVYEYMENNSLAHALFGGE--NSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLA-KLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKN--NMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEG 704
            EF  E  ++S ++ P  V + G   +   + LLV E+M N SL   +      NS    +W  R KI L IA+ +  LH +    I+HRDIK+ NVL+D++LN K+ DFGLA + + +++   ST  AGT+GY+ P+Y     L+ K DV+SFG++ LEI+SG+   ++ Y P    +  +DWA  + + G +  + DPR+G   +      +  +A  C       RP M EVV  L G
Sbjct:   97 EFHNEFEILSRIRSPRFVNLLGFSADNSKEPLLVVEFMGNGSLYDVIHSDTVLNSGAISSWSKRIKIALQIAKAVHLLHSQET-PIIHRDIKSANVLMDKNLNAKLGDFGLAIRCNVDDQKVKSTPPAGTMGYLDPDYVTADRLSTKTDVFSFGILLLEIISGRKAIDVRYSP----SFIVDWAIPMIKRGKIGGIYDPRIGPPIDVSVRNHLGLVAAKCVRTCREKRPGMEEVVGWLTG 331          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGK------NNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTM-SEVVSMLE 701
            E+  E+ ++S ++HPN++ + G C EG  L  VYEY+   SL   L   +NS   L+W  R +I   I   L FLH      +VH D+K  N+LLD +L  K+SDFG    L       + T V GT+ Y+ PE +  G LT K+DVYSFG++ L +++G+      N + Y  D               +GTL +L+DP L  ++  V+AE++ ++AL C       RP + +EV  +LE
Sbjct:  520 EYQQEVDVLSKMRHPNIITLIGACPEGWSL--VYEYLPGGSLEDRLTCKDNSP-PLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLHPNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALD---------------NGTLNDLLDP-LAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLE 741          
The following BLAST results are available for this feature:
BLAST of FC929266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SRF2_ARATH1.811e-3133.86Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
IRAK4_HUMAN2.365e-3136.75Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]
Y1570_ARATH4.034e-3135.06Probable LRR receptor-like serine/threonine-protei... [more]
Y4265_ARATH5.269e-3135.66Probable LRR receptor-like serine/threonine-protei... [more]
SRF5_ARATH6.881e-3135.96Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
GSO1_ARATH8.987e-3136.63LRR receptor-like serine/threonine-protein kinase ... [more]
IRAK4_MOUSE1.174e-3035.86Interleukin-1 receptor-associated kinase 4 OS=Mus ... [more]
PUB34_ARATH1.533e-3035.15U-box domain-containing protein 34 OS=Arabidopsis ... [more]
CCR35_ARATH2.615e-3035.42Serine/threonine-protein kinase-like protein At3g5... [more]
PUB33_ARATH5.825e-3035.27U-box domain-containing protein 33 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929266 ID=FC929266; Name=FC929266; organism=Citrus clementina; type=EST; length=793bp
GTGAATTCTTATATGAGATAGCCATGATTTCGTGTTTGCAACACCCAAAT
CTTGTTAAAATTCATGGCTGTTGTGTTGAAGGGGATCAACTCTTGCTAGT
ATATGAATACATGGAAAACAACAGCCTTGCCCATGCTTTATTCGGTGGCG
AAAACAGTCAACTGAAATTGAACTGGCCAGTGAGGCAGAAGATCTGCCTT
GGGATAGCCAGAGGTTTAGCTTTTCTACATGAAGAATCCAGATTCAAAAT
AGTTCATAGAGACATCAAAGCTACGAATGTTCTGCTAGATAGAGATTTAA
ACCCCAAAATATCTGACTTTGGACTGGCTAAGCTTGATGAGGAGGAAAAA
ACTCACATCAGTACTCGAGTTGCTGGAACAATAGGATATATGGCACCAGA
GTACGCTCTATGGGGTTACTTGACCTACAAAGCAGATGTTTACAGTTTCG
GAGTTGTGGCTTTGGAAATCGTCAGTGGGAAGAATAATATGAGTTATGTG
CCAGACAGTAATTGCACCTGTCCTCTTGACTGGGCCTTCCATTTACACCG
AAGTGGTACGTTAATGGAGTTAGTGGATCCAAGGCTCGGATCAGAATTCA
ACAAGGTTGAAGCAGAGAGAATGATTAAAATAGCACTCTTATGCACCAAT
GCGTCACCTTCACTAAGGCCAACCATGTCTGAAGTGGTAAGCATGCTGGA
AGGATCTTCTAACATTCCGGATGTAATCCCTGAAGCCGGTGGTTTGAGTG
AAGACTTGAGGTTTAAAACTCTAAGAGAACATCCAAGAGAAAT
back to top