FC929266

Overview
NameFC929266
Unique NameFC929266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SRMS_MOUSE (Tyrosine-protein kinase Srms OS=Mus musculus GN=Srms PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 50/152 (32.89%), Postives = 83/152 (54.61%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            EI  +  L+H  L+++H  C  G+ + +V E M   +L   L   E   L L  P        +A G+++L E    ++VHRD+ A NVL+  DL  K++DFGLA+L +++    S+     + + APE A +   + K+DV+SFG++  E+
Sbjct:  277 EIEALKSLRHERLIRLHAICSLGEPVYIVTELMGKGNLQVYLGSSEGKALSL--PHLLGFACQVAEGMSYLEER---RVVHRDLAARNVLVGDDLTCKVADFGLARLLKDDVYSPSSGSKIPVKWTAPEAANYRVFSQKSDVWSFGILLYEV 423          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: MST4_HUMAN (Serine/threonine-protein kinase MST4 OS=Homo sapiens GN=MST4 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 65/225 (28.89%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            EI ++S      + K +G  ++G +L ++ EY+   S    L  G   + ++   +++     I +GL +LH E +   +HRDIKA NVLL    + K++DFG+A    + +   +T V GT  +MAPE         KAD++S G+ A+E+  G+      P ++   P+   F + ++        P L  +F K   E        C N  PS RPT  E++
Sbjct:   70 EITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKE-----ILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE------PPNSDMHPMRVLFLIPKNN------PPTLVGDFTKSFKE----FIDACLNKDPSFRPTAKELL 269          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SRMS_HUMAN (Tyrosine-protein kinase Srms OS=Homo sapiens GN=SRMS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            EI  +  L+H  L+++H  C  G+ + +V E M   +L   L   E   L+L  P        +A G+++L E+   ++VHRD+ A NVL+D  L  K++DFGLA+L +++    S+     + + APE A +   + K+DV+SFGV+  E+
Sbjct:  273 EIQTLKGLRHERLIRLHAVCSGGEPVYIVTELMRKGNLQAFLGTPEGRALRL--PPLLGFACQVAEGMSYLEEQ---RVVHRDLAARNVLVDDGLACKVADFGLARLLKDDIYSPSSSSKIPVKWTAPEAANYRVFSQKSDVWSFGVLLHEV 419          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: NTRK1_CHICK (High affinity nerve growth factor receptor (Fragment) OS=Gallus gallus GN=NTRK1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL----------AHALFGGEN---SQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            +F  E  +++ LQH ++VK +G C EGD L++V+EYM++  L          A  L  G+     QL L+  +  +I   IA G+ +L   +    VHRD+   N L+  DL  KI DFG+++ +   +   +  R    I +M PE  L+   T ++D++SFGVV  EI
Sbjct:  539 DFQREAELLTVLQHEHIVKFYGVCTEGDPLIMVFEYMKHGDLNRFLRSHGPDAKILDQGQGQPCGQLTLSHML--QIATQIASGMVYL---ASLHFVHRDLATRNCLVGHDLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEI 703          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: MST4_MOUSE (Serine/threonine-protein kinase MST4 OS=Mus musculus GN=Mst4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 65/225 (28.89%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            EI ++S      + K +G  ++G +L ++ EY+   S    L  G   + ++   +++     I +GL +LH E +   +HRDIKA NVLL    + K++DFG+A    + +   +T V GT  +MAPE         KAD++S G+ A+E+  G+      P ++   P+   F + ++        P L  +F K   E        C N  PS RPT  E++
Sbjct:   70 EITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKE-----ILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE------PPNSDMHPMRVLFLIPKNN------PPTLIGDFTKSFKE----FIDACLNKDPSFRPTAKELL 269          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA7_RAT (Ephrin type-A receptor 7 OS=Rattus norvegicus GN=Epha7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTI--GYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN+V + G    G  +++V E+MEN +L   L    G+ + ++L   +R     GIA G+ +L +      VHRD+ A N+L++ +L  K+SDFGL+++ E++   + T   G I   + APE   +   T  +DV+S+G+V  E++S
Sbjct:  678 DFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR-----GIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 831          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA7_MOUSE (Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTI--GYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN+V + G    G  +++V E+MEN +L   L    G+ + ++L   +R     GIA G+ +L +      VHRD+ A N+L++ +L  K+SDFGL+++ E++   + T   G I   + APE   +   T  +DV+S+G+V  E++S
Sbjct:  678 DFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR-----GIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 831          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA7_HUMAN (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTI--GYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN+V + G    G  +++V E+MEN +L   L    G+ + ++L   +R     GIA G+ +L +      VHRD+ A N+L++ +L  K+SDFGL+++ E++   + T   G I   + APE   +   T  +DV+S+G+V  E++S
Sbjct:  678 DFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR-----GIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 831          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: FRAY1_DICDI (Serine/threonine-protein kinase fray1 OS=Dictyostelium discoideum GN=fray1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 62/235 (26.38%), Postives = 109/235 (46.38%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWP------VRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            + + E+ +++   HPNL+  H   +E +QL LV +Y+   SLA  +        K  +P      +   +   + +GL +LH   R   +HRD+K+ N+L+  D   +++DFG++ + E+        + GT  +MAPE           D++SFG+ A+E++ GK     +P S     L +      S +L E  D  + S   K   ++       C    PS RP  S+++
Sbjct:  140 DVIKEVKVMNGNNHPNLIHYHTSFLENNQLWLVMDYLGGGSLADIM--------KFKYPDGIPEVLAVTVLKSLLKGLEYLHSHQR---IHRDLKSDNILIGEDGAIELADFGVSAMFEKNTCCSRKTIVGTPCWMAPEIISERGYNQGVDIWSFGITAIELIRGKPPGYDLPPSKVFMNLLFG----NSPSLQEEEDKGVCSHLYKDLVDK-------CLQKEPSKRPNASKLL 352          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: FGR_FSVGR (Tyrosine-protein kinase transforming protein Fgr OS=Feline sarcoma virus (strain Gardner-Rasheed) GN=V-FGR PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 3
Query:    9 LYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            L E  ++  L+H  LV+++    E + + +V E+M + SL   L   E   L L  P    +   +A G+A++    R   +HRD++A N+L+   L  KI+DFGLA+L E+ + +        I + APE AL+G  T K+DV+SFG++  E++S
Sbjct:  327 LEEAQIMKLLRHDKLVQLYAVVPE-EPIYIVTEFMCHGSLLEFLKDQEGQDLTL--PQLVDMAAQVAEGMAYME---RMDYIHRDLRAANILVGERLVCKIADFGLARLIEDNEYNPRQGAKFPIKWTAPEAALFGRFTIKSDVWSFGILLTELIS 476          
The following BLAST results are available for this feature:
BLAST of FC929266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SRMS_MOUSE6.252e-1632.89Tyrosine-protein kinase Srms OS=Mus musculus GN=Sr... [more]
MST4_HUMAN6.252e-1628.89Serine/threonine-protein kinase MST4 OS=Homo sapie... [more]
SRMS_HUMAN8.166e-1633.55Tyrosine-protein kinase Srms OS=Homo sapiens GN=SR... [more]
NTRK1_CHICK8.166e-1633.53High affinity nerve growth factor receptor (Fragme... [more]
MST4_MOUSE8.166e-1628.89Serine/threonine-protein kinase MST4 OS=Mus muscul... [more]
EPHA7_RAT8.166e-1632.72Ephrin type-A receptor 7 OS=Rattus norvegicus GN=E... [more]
EPHA7_MOUSE8.166e-1632.72Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 ... [more]
EPHA7_HUMAN8.166e-1632.72Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ... [more]
FRAY1_DICDI1.067e-1526.38Serine/threonine-protein kinase fray1 OS=Dictyoste... [more]
FGR_FSVGR1.067e-1533.97Tyrosine-protein kinase transforming protein Fgr O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929266 ID=FC929266; Name=FC929266; organism=Citrus clementina; type=EST; length=793bp
GTGAATTCTTATATGAGATAGCCATGATTTCGTGTTTGCAACACCCAAAT
CTTGTTAAAATTCATGGCTGTTGTGTTGAAGGGGATCAACTCTTGCTAGT
ATATGAATACATGGAAAACAACAGCCTTGCCCATGCTTTATTCGGTGGCG
AAAACAGTCAACTGAAATTGAACTGGCCAGTGAGGCAGAAGATCTGCCTT
GGGATAGCCAGAGGTTTAGCTTTTCTACATGAAGAATCCAGATTCAAAAT
AGTTCATAGAGACATCAAAGCTACGAATGTTCTGCTAGATAGAGATTTAA
ACCCCAAAATATCTGACTTTGGACTGGCTAAGCTTGATGAGGAGGAAAAA
ACTCACATCAGTACTCGAGTTGCTGGAACAATAGGATATATGGCACCAGA
GTACGCTCTATGGGGTTACTTGACCTACAAAGCAGATGTTTACAGTTTCG
GAGTTGTGGCTTTGGAAATCGTCAGTGGGAAGAATAATATGAGTTATGTG
CCAGACAGTAATTGCACCTGTCCTCTTGACTGGGCCTTCCATTTACACCG
AAGTGGTACGTTAATGGAGTTAGTGGATCCAAGGCTCGGATCAGAATTCA
ACAAGGTTGAAGCAGAGAGAATGATTAAAATAGCACTCTTATGCACCAAT
GCGTCACCTTCACTAAGGCCAACCATGTCTGAAGTGGTAAGCATGCTGGA
AGGATCTTCTAACATTCCGGATGTAATCCCTGAAGCCGGTGGTTTGAGTG
AAGACTTGAGGTTTAAAACTCTAAGAGAACATCCAAGAGAAAT
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