FC929266

Overview
NameFC929266
Unique NameFC929266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA3_RAT (Ephrin type-A receptor 3 OS=Rattus norvegicus GN=Epha3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTI--GYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++++ G   +   +++V EYMEN SL   L     + + ++L   +R     GIA G+ +L   S    VHRD+ A N+L++ +L  K+SDFGL+++ E++     T   G I   + +PE   +   T  +DV+S+G+V  E++S
Sbjct:  667 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR-----GIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPVRWTSPEATAYRKFTSASDVWSYGIVLWEVMS 820          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SVKA_DICDI (Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 68/243 (27.98%), Postives = 116/243 (47.74%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEV-----VSMLEGSSNIPDVI 728
            EI ++S  + P + K  G  ++G +L ++ EY+   S+   +  G   +  +   +R+     + +GL +LH E +   +HRDIKA NVLL    + K++DFG++    ++ T  +T V GT  +MAPE         KAD++S G+ ALE+  G+      P      P+   F + +         P L   F+K   E       LC N  P+ RPT  ++     +   + +S++ D+I
Sbjct:   58 EINVLSQCESPFVTKYFGSFLKGSKLWIIMEYLAGGSVLDLMKPGPFDEGYIAIILRE-----LLKGLEYLHSEGK---IHRDIKAANVLLSASGDVKLADFGVSGQLTDQMTKRNTFV-GTPFWMAPEVIKQTGYDSKADIWSMGITALEMAKGE------PPRADLHPMRALFLIPKD------PPPTLEGNFSKGFKE----FCALCLNKDPNQRPTAKDLLKHKFIKAAKKTSSLTDLI 275          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: STK39_RAT (STE20/SPS1-related proline-alanine-rich protein kinase OS=Rattus norvegicus GN=Stk39 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 72/240 (30.00%), Postives = 112/240 (46.67%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLA----HALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFG----LAKLDEEEKTHISTRVAGTIGYMAPEY--ALWGYLTYKADVYSFGVVALEIVSGKNNM-SYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            E L EI  +S   HPN+V  +   V  D+L LV + +   S+     + +  GE+    L   +   I   +  GL +LH   +   +HRD+KA N+LL  D + +I+DFG    LA   +  +  +     GT  +MAPE    + GY  +KAD++SFG+ A+E+ +G      Y P       L      +   TL   V+ +   E  K   +   K+  LC    PS RPT +E++
Sbjct:  114 ELLKEIQAMSQCSHPNVVTYYTSFVVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILKEVLEGLDYLHRNGQ---IHRDLKAGNILLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADMWSFGITAIELATGAAPYHKYPPMKVLMLTLQ-----NDPPTLETGVEDK---EMMKKYGKSFRKLLSLCLQKDPSKRPTAAELL 341          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: STK39_MOUSE (STE20/SPS1-related proline-alanine-rich protein kinase OS=Mus musculus GN=Stk39 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 72/240 (30.00%), Postives = 112/240 (46.67%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLA----HALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFG----LAKLDEEEKTHISTRVAGTIGYMAPEY--ALWGYLTYKADVYSFGVVALEIVSGKNNM-SYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            E L EI  +S   HPN+V  +   V  D+L LV + +   S+     + +  GE+    L   +   I   +  GL +LH   +   +HRD+KA N+LL  D + +I+DFG    LA   +  +  +     GT  +MAPE    + GY  +KAD++SFG+ A+E+ +G      Y P       L      +   TL   V+ +   E  K   +   K+  LC    PS RPT +E++
Sbjct:  117 ELLKEIQAMSQCSHPNVVTYYTSFVVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILKEVLEGLDYLHRNGQ---IHRDLKAGNILLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADMWSFGITAIELATGAAPYHKYPPMKVLMLTLQ-----NDPPTLETGVEDK---EMMKKYGKSFRKLLSLCLQKDPSKRPTAAELL 344          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: STK39_HUMAN (STE20/SPS1-related proline-alanine-rich protein kinase OS=Homo sapiens GN=STK39 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 72/240 (30.00%), Postives = 112/240 (46.67%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLA----HALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFG----LAKLDEEEKTHISTRVAGTIGYMAPEY--ALWGYLTYKADVYSFGVVALEIVSGKNNM-SYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVV 689
            E L EI  +S   HPN+V  +   V  D+L LV + +   S+     + +  GE+    L   +   I   +  GL +LH   +   +HRD+KA N+LL  D + +I+DFG    LA   +  +  +     GT  +MAPE    + GY  +KAD++SFG+ A+E+ +G      Y P       L      +   TL   V+ +   E  K   +   K+  LC    PS RPT +E++
Sbjct:  107 ELLKEIQAMSQCSHPNVVTYYTSFVVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILKEVLEGLDYLHRNGQ---IHRDLKAGNILLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADMWSFGITAIELATGAAPYHKYPPMKVLMLTLQ-----NDPPTLETGVEDK---EMMKKYGKSFRKLLSLCLQKDPSKRPTAAELL 334          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: SPKA_DICDI (Stress-activated protein kinase alpha OS=Dictyostelium discoideum GN=spkA-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 59/232 (25.43%), Postives = 107/232 (46.12%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSML 698
            EF  E  ++S ++  ++V  +G  +E  +L +V E     SL H +   +N+ L + W    +  +   RG+  LH+     IVHRD+K+ N+L++     K+ DFGL++ +         ++ GT  Y APE       + K+DVYS  V+  E+V+   N  Y    +    L   F +     +++     L         E ++ +   C + +   RPT ++++S L
Sbjct:  391 EFKKEFQIMSAIRSKHVVHFYGAVLE-PKLCMVMENCSRGSLYHVM---DNNSLDIGWERTFRFAIETVRGIECLHKWDP-PIVHRDLKSLNLLVNDKWEIKVCDFGLSRFNTGSNLETLVKMRGTFAYCAPEVYYGEQFSGKSDVYSIAVILWELVTRCINGRYERPFSEYKNLQHDFQI-----IIQTAKKNLRPTIPNACPESLVSLIQDCWDPNLENRPTCTDILSRL 612          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: RIPK2_MOUSE (Receptor-interacting serine/threonine-protein kinase 2 OS=Mus musculus GN=Ripk2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLD----EEEKTHISTRVAGTIGYMAPEYALWGY---LTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHL---HRSGTLME 569
            + L E  ++   +   ++ I G C E + L +V EYM N SL + L   +     + WP+R +I   IA G+ +LH  +   ++H D+K  N+LLD + + KI+DFGL+K       + +++ S    GTI YM PE    G     + K D+YS+ V+  E++S K      P    T PL   + +   HR  T  E
Sbjct:   62 DILREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSL-NELLHRKTEYPDIAWPLRFRILHEIALGVNYLHNMNP-PLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSYKSAPEGGTIIYMPPENYEPGQKSRASVKHDIYSYAVIMWEVLSRKQ-----PFEEVTNPLQIMYSVSQGHRPDTSEE 253          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: IRAK2_PONAB (Interleukin-1 receptor-associated kinase-like 2 OS=Pongo abelii GN=IRAK2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = 3
Query:    3 EFLYEIAMISCLQ--HPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISD--FGLAKLDEEEK-THISTRVAGT-IGYMAPEYALWGYLTYKADVYSFGVVALEIVSG 479
            E  ++  +  CL+  HPN++ + G C        +Y YM N SL   L G   S   L WP R  IC G+   + +LH     +I+H ++K++NVLLD++L PK++     L  +++  K T + T +  T   Y+  ++   G LT + D++S G+V  E+++G
Sbjct:  251 ERFFQAELQICLRCCHPNVLPVLGFCAARQFHSFIYPYMANGSLQDRLQGQGGSD-PLPWPQRVSICSGLLCAVEYLHG---LEIIHSNVKSSNVLLDQNLTPKLAHPMAHLCPVNKRSKYTMMKTHLFRTSAAYLPEDFIRVGQLTKRVDIFSCGIVLAEVLTG 411          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA3_HUMAN (Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAG--TIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++++ G   +   +++V EYMEN SL   L     + + ++L   +R     GIA G+ +L   S    VHRD+ A N+L++ +L  K+SDFGL+++ E++     T   G   I + +PE   +   T  +DV+S+G+V  E++S
Sbjct:  666 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR-----GIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 819          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: BYR2_SCHPO (Protein kinase byr2 OS=Schizosaccharomyces pombe GN=byr2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 73/233 (31.33%), Postives = 111/233 (47.64%), Query Frame = 3
Query:   15 EIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHAL--FGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVA-----GTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVS 692
            EIA++  L H ++V+  G  +  D L +  EY+   S+A  L  +G     L  N+ ++Q +     +GL +LH      IVHRDIK  N+L+D     KISDFG++K  E   T   T  A     G+  +MAPE       T K D++S G + +E+++ K+     P  NC    D    + R G   E + P   S  +    + + K   +  N    LRPT SE++S
Sbjct:  447 EIALLQELSHEHIVQYLGSNLNSDHLNIFLEYVPGGSVAGLLTMYGSFEETLVKNF-IKQTL-----KGLEYLHSRG---IVHRDIKGANILVDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMHTEKTDIWSLGCLVIEMLTSKH-----PYPNC----DQMQAIFRIG---ENILPEFPSNISSSAIDFLEKTFAIDCN----LRPTASELLS 654          
The following BLAST results are available for this feature:
BLAST of FC929266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPHA3_RAT6.913e-1532.10Ephrin type-A receptor 3 OS=Rattus norvegicus GN=E... [more]
SVKA_DICDI9.029e-1527.98Serine/threonine-protein kinase svkA OS=Dictyostel... [more]
STK39_RAT9.029e-1530.00STE20/SPS1-related proline-alanine-rich protein ki... [more]
STK39_MOUSE9.029e-1530.00STE20/SPS1-related proline-alanine-rich protein ki... [more]
STK39_HUMAN9.029e-1530.00STE20/SPS1-related proline-alanine-rich protein ki... [more]
SPKA_DICDI9.029e-1525.43Stress-activated protein kinase alpha OS=Dictyoste... [more]
RIPK2_MOUSE9.029e-1531.66Receptor-interacting serine/threonine-protein kina... [more]
IRAK2_PONAB9.029e-1531.52Interleukin-1 receptor-associated kinase-like 2 OS... [more]
EPHA3_HUMAN9.029e-1532.10Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 ... [more]
BYR2_SCHPO9.029e-1531.33Protein kinase byr2 OS=Schizosaccharomyces pombe G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929266 ID=FC929266; Name=FC929266; organism=Citrus clementina; type=EST; length=793bp
GTGAATTCTTATATGAGATAGCCATGATTTCGTGTTTGCAACACCCAAAT
CTTGTTAAAATTCATGGCTGTTGTGTTGAAGGGGATCAACTCTTGCTAGT
ATATGAATACATGGAAAACAACAGCCTTGCCCATGCTTTATTCGGTGGCG
AAAACAGTCAACTGAAATTGAACTGGCCAGTGAGGCAGAAGATCTGCCTT
GGGATAGCCAGAGGTTTAGCTTTTCTACATGAAGAATCCAGATTCAAAAT
AGTTCATAGAGACATCAAAGCTACGAATGTTCTGCTAGATAGAGATTTAA
ACCCCAAAATATCTGACTTTGGACTGGCTAAGCTTGATGAGGAGGAAAAA
ACTCACATCAGTACTCGAGTTGCTGGAACAATAGGATATATGGCACCAGA
GTACGCTCTATGGGGTTACTTGACCTACAAAGCAGATGTTTACAGTTTCG
GAGTTGTGGCTTTGGAAATCGTCAGTGGGAAGAATAATATGAGTTATGTG
CCAGACAGTAATTGCACCTGTCCTCTTGACTGGGCCTTCCATTTACACCG
AAGTGGTACGTTAATGGAGTTAGTGGATCCAAGGCTCGGATCAGAATTCA
ACAAGGTTGAAGCAGAGAGAATGATTAAAATAGCACTCTTATGCACCAAT
GCGTCACCTTCACTAAGGCCAACCATGTCTGAAGTGGTAAGCATGCTGGA
AGGATCTTCTAACATTCCGGATGTAATCCCTGAAGCCGGTGGTTTGAGTG
AAGACTTGAGGTTTAAAACTCTAAGAGAACATCCAAGAGAAAT
back to top