FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XANOR (Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=asnS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 105/192 (54.69%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD   DD+ F+A+  DK+ I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  275 VLDERGDDLAFLAERVDKNAISKLEAFINAPFEQIDYTDAVKLLQHA---GKTFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XANAC (Asparaginyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=asnS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 105/192 (54.69%), Postives = 135/192 (70.31%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD   DD+ F+A+  DK+ I +L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  275 VLDERGDDLAFLAERVDKNAIAKLEAFINAPFEQIDYTDAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LEGPL (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Lens) GN=asnS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 107/192 (55.73%), Postives = 135/192 (70.31%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F  +     CI R+  +A + FE +TYT          ++   FE  V WG+DL SEHERYL EV  +KPVIV NYP+ IK FYMRLNDD KTVAAMDVL P +GE+IGGSQREER +++  R+++  L  E Y+WY DLRR+GTV H+GFGLGFER+I + TG+ N+RDVIPFPR PG AD
Sbjct:  278 VLEERSDDMDFFNQFVAPGCIERMEHIADSEFEIMTYTDAIKALEASEQK---FEFPVSWGLDLQSEHERYLAEVLCKKPVIVTNYPQEIKGFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEILDRRMDECNLNKEHYQWYRDLRRYGTVPHAGFGLGFERLISYVTGVSNVRDVIPFPRTPGHAD 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LEGPA (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=asnS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 107/192 (55.73%), Postives = 135/192 (70.31%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F  +     CI R+  +A + FE +TYT          ++   FE  V WG+DL SEHERYL EV  +KPVIV NYP+ IK FYMRLNDD KTVAAMDVL P +GE+IGGSQREER +++  R+++  L  E Y+WY DLRR+GTV H+GFGLGFER+I + TG+ N+RDVIPFPR PG AD
Sbjct:  278 VLEERADDMDFFNQFVAPGCIERMEHIADSEFEIMTYTDAVKALEASDQK---FEFPVSWGLDLQSEHERYLAEVLCKKPVIVTNYPQEIKGFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEILDRRMDECNLNKEHYQWYRDLRRYGTVPHAGFGLGFERLISYVTGVSNVRDVIPFPRTPGHAD 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XANOM (Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=asnS PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.052e-56
Identity = 105/192 (54.69%), Postives = 135/192 (70.31%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD   DD+ F+A+  DK  I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  275 VLDERGDDLAFLAERVDKKAISKLEAFINAPFEQIDYTDAVKLLQHA---GKTFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_MICAN (Asparaginyl-tRNA synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=asnS PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.052e-56
Identity = 105/193 (54.40%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L++C +D++F  +  DK+ ++    + ++ F RITY+          K  + FE  VEWG+DL SEHERYL E  F+KPVIV NYPK IKAFYMRL+D+ KTV+AMD+L PK+GE+IGGSQREER DV+  R+++ G+  +   WYLDLRR+G+V H+GFGLGFER++ F TG+ NIRDVIPFPR P  AD
Sbjct:  264 FVLENCPEDLQFFNERIDKTVLSTAENIVNSEFGRITYSEAIELLE---KADRQFEFPVEWGVDLQSEHERYLAEELFKKPVIVTNYPKTIKAFYMRLDDNNKTVSAMDILAPKIGEIIGGSQREERLDVLIQRMQEQGMNPDDLWWYLDLRRYGSVPHAGFGLGFERLVQFMTGMTNIRDVIPFPRTPLSAD 453          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACCR (Asparaginyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=asnS PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.052e-56
Identity = 106/193 (54.92%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+H  ++MEF     DK+ + R+  V ++ F RITYT          + G  F+  VEWGIDL +EHERYL+E  F++PV V +YPK IKAFYMRLN+D KTVAA D+LVP +GELIGGSQREER DV+  RI+++G+  E Y WYL+LR++G  KH+GFGLGFER +++ TG+ NIRDVIPFPR PG ++
Sbjct:  273 YVLEHAPEEMEFFNSFVDKTVLERMNNVINSDFGRITYTEAIKVLQ---ESGADFKYPVEWGIDLQTEHERYLSEEIFKRPVFVTDYPKDIKAFYMRLNEDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYGGTKHAGFGLGFERFLMYITGMANIRDVIPFPRTPGSSE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOTH (Asparaginyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.617e-56
Identity = 105/188 (55.85%), Postives = 139/188 (73.94%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ L++  ++MEF     D + ++RL  + S+ F  +TYT          K  + FE  V+WG DL +EHERYLTE  F+KPV V +YPK IKAFYMRLNDD KTVAAMD+LVP VGE+IGGSQREER D +++R++++GL +E Y WYLDLRR+G+ +H+GFGLGFER I++ TG+ NIRDVIPFPR
Sbjct:  273 NYCLENAPEEMEFFNNFIDNTLLDRLNNIVSSDFAHVTYTEAIDILS---KADQKFEYPVKWGNDLQTEHERYLTEKVFKKPVFVTDYPKDIKAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKELGLKMEDYWWYLDLRRYGSTRHAGFGLGFERAIMYITGMSNIRDVIPFPR 457          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ALKMQ (Asparaginyl-tRNA synthetase OS=Alkaliphilus metalliredigens (strain QYMF) GN=asnS PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.125e-55
Identity = 106/193 (54.92%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++   +++EF  +  DK  I+RL  VA++ F ++TYT          + G+ FE  VEWG DL +EHERYLTE  F+KPV V +YPK IKAFYMR+NDD KTVAAMD+LVP +GE+IGGSQREER DV+  R++ MGL  E Y WYL+LR++G VKH+G+GLGFER I++ TG+ NIRDVI +PR P  A+
Sbjct:  273 YVMEQAPEELEFFNQFVDKGLIDRLNHVANSEFGKVTYTEAVKMLQ---ESGEEFEYPVEWGHDLQTEHERYLTEKVFKKPVFVMDYPKDIKAFYMRMNDDNKTVAAMDLLVPGIGEIIGGSQREERLDVLTDRMKQMGLDEEEYWWYLELRKYGGVKHAGYGLGFERAIMYLTGMANIRDVISYPRTPKSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_DESHY (Asparaginyl-tRNA synthetase OS=Desulfitobacterium hafniense (strain Y51) GN=asnS PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.470e-55
Identity = 106/193 (54.92%), Postives = 139/193 (72.02%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+H  ++M F  +  DK+  +RL  + ++ F R+TYT          KE + FE  VEWG DL +EHER+LTE  F+KPV V +YPK IKAFYMRLNDD KTVAAMD+LVP VGE+IGGSQREER D ++ R+ ++GL  E Y WYLDLR++G  +H+G+GLGFER+I++ TGI NIRDV+ FPR    AD
Sbjct:  273 YVLEHAPEEMAFFNEFVDKTLFDRLDNIVNSDFGRLTYTEAIEILQ---KEKERFEFPVEWGADLQTEHERFLTEQIFKKPVFVVDYPKDIKAFYMRLNDDQKTVAAMDLLVPGVGEIIGGSQREERLDYLEKRMAELGLHKEDYSWYLDLRKYGGTRHAGYGLGFERVIMYLTGISNIRDVVAFPRTVKNAD 462          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_XANOR3.868e-5654.69Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae ... [more]
SYN_XANAC3.868e-5654.69Asparaginyl-tRNA synthetase OS=Xanthomonas axonopo... [more]
SYN_LEGPL3.868e-5655.73Asparaginyl-tRNA synthetase OS=Legionella pneumoph... [more]
SYN_LEGPA3.868e-5655.73Asparaginyl-tRNA synthetase OS=Legionella pneumoph... [more]
SYN_XANOM5.052e-5654.69Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae ... [more]
SYN_MICAN5.052e-5654.40Asparaginyl-tRNA synthetase OS=Microcystis aerugin... [more]
SYN_BACCR5.052e-5654.92Asparaginyl-tRNA synthetase OS=Bacillus cereus (st... [more]
SYN_CLOTH8.617e-5655.85Asparaginyl-tRNA synthetase OS=Clostridium thermoc... [more]
SYN_ALKMQ1.125e-5554.92Asparaginyl-tRNA synthetase OS=Alkaliphilus metall... [more]
SYN_DESHY1.470e-5554.92Asparaginyl-tRNA synthetase OS=Desulfitobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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