FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PSEHT (Asparaginyl-tRNA synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=asnS PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.277e-55
Identity = 102/191 (53.40%), Postives = 133/191 (69.63%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDMEF A+  +K+ I RL       F ++ YT            GK FE  VEWG+DL SEHERYL E  F+ PV++ NYP+ IKAFYMR N+D KTVAAMD++ P +GE+IGGSQREER D++ +R+++MGL  + Y WY DLR++GTV HSGFGLGFER++ + TG+ N+RDVI FPR  G A
Sbjct:  276 VLEERRDDMEFFAQRVEKTAITRLEEFVEKDFAQVDYTEAVEILKAC---GKKFEYAVEWGVDLQSEHERYLAEEHFKAPVVIKNYPRDIKAFYMRQNEDGKTVAAMDIVAPGIGEIIGGSQREERLDILDARLDEMGLNKDDYSWYRDLRKYGTVPHSGFGLGFERLVAYVTGMGNVRDVIAFPRTKGSA 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_MYXXD (Asparaginyl-tRNA synthetase OS=Myxococcus xanthus (strain DK 1622) GN=asnS PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.586e-55
Identity = 105/191 (54.97%), Postives = 132/191 (69.11%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+ C  D++F  +   K  I R+    ++ FERI YT          K  K FE + EWG DL +EHERYLTE    +PV+V NYP+ IK+FYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  RI+  GL  E Y+WY DLRR+G+V H+GFGLGFER+I++  G+ NIRD IP+PR PG A
Sbjct:  277 VLNDCAPDLKFFEERVQKGVIERMEKFINSSFERIDYTEAVEILK---KAKKKFEFEPEWGKDLQTEHERYLTEEHVGRPVVVMNYPEAIKSFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDQRIQKFGLKPESYQWYRDLRRYGSVPHAGFGLGFERLIVYMCGLQNIRDAIPYPRVPGSA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BUCAP (Asparaginyl-tRNA synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=asnS PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.295e-55
Identity = 106/192 (55.21%), Postives = 133/192 (69.27%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            LL +C +D++F+    D   INRL+   S  F RI Y           K+   F+N V +G+DL +EHER+L E  F+ PV++ NYPK +KAFYMRLNDD KTVAAMD+LVP +GELIGGSQREER  V+  R+ ++GL  E Y WY DLRR+GTV HSGFG+GFER+I + TGI NIRD+IPFPR    AD
Sbjct:  277 LLKYCINDIKFLKNYIDNDIINRLKKFLSVNFIRINYKDAIDILLNSKKK---FDNVVSFGVDLNAEHERFLVEKHFKAPVVIINYPKELKAFYMRLNDDKKTVAAMDLLVPGIGELIGGSQREERISVLDLRLSELGLRKEDYWWYRDLRRYGTVHHSGFGMGFERLISYITGISNIRDIIPFPRTVKNAD 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PSYIN (Asparaginyl-tRNA synthetase OS=Psychromonas ingrahamii (strain 37) GN=asnS PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.527e-55
Identity = 106/186 (56.99%), Postives = 126/186 (67.74%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DDM F A+  DK  I RL  + S+ F R+ YT            GK FE  V WG+DL SEHERYL EV    PVI+ NYPK IKAFYM+LN D KTVAAMDVL P +GE+IGGSQREE    +  R ++MG+  E Y WY DLR++GTV H+GFGLGFER++ + TG+ NIRDVI FPR PG AD
Sbjct:  283 DDMAFFAQRVDKEAITRLEKIVSSEFVRMDYTDAIEILQNC---GKEFEFPVAWGVDLQSEHERYLAEVHVGAPVILQNYPKDIKAFYMKLNADGKTVAAMDVLAPGIGEIIGGSQREEDLVALDKRFDEMGINKEDYSWYRDLRKYGTVPHAGFGLGFERLVSYVTGVQNIRDVIAFPRAPGSAD 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ANASP (Asparaginyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=asnS PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.244e-54
Identity = 107/192 (55.73%), Postives = 132/192 (68.75%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+ C +DMEF  +  D + +     + +  FER+TYT          K    FE  V WG+DL SEHERYL E  F+KPVIV +YP  IKAFYMRL+DD KTV AMDVL PK+GE+IGGSQREER DV++ R+   G+  E   WYLDLRR+GTV H+GFGLGFER++ F TG+ NIRDVIPFPR P  A+
Sbjct:  274 VLEKCPEDMEFFNQRIDNTVLATAENIINNQFERLTYTDAIKLLE---KADVKFEYPVSWGLDLQSEHERYLAEQLFKKPVIVTDYPAQIKAFYMRLSDDEKTVRAMDVLAPKIGEIIGGSQREERLDVLERRVLAQGMQPEDLWWYLDLRRYGTVPHAGFGLGFERLVQFITGMGNIRDVIPFPRTPQNAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SYNY3 (Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=asnS PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.625e-54
Identity = 103/193 (53.37%), Postives = 135/193 (69.95%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+ C +DMEF  +  D + +     + +  F  +TY+          K  + FE  V WG+DL SEHERYL E  F++P IV +YPK IKAFYMRLNDD KTVAAMD+L PK+GE+IGGSQREER D++  R+++ G+P E   WYLDLRR+G+V H+GFGLGFER++ F TG+ NIRDVIPFPR P  A+
Sbjct:  272 FVLEKCPEDMEFFDQRIDNTVLATADNIINNEFAWLTYSEAIKLLE---KADQKFEYPVAWGVDLQSEHERYLAETVFKRPTIVTDYPKDIKAFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERLDILTQRMQEQGVPEEDLWWYLDLRRYGSVPHAGFGLGFERIVQFMTGMANIRDVIPFPRTPMNAE 461          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XYLFT (Asparaginyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=asnS PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.053e-53
Identity = 100/192 (52.08%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD+ F+ +  +K+ I++L    ++PFERI YT          + GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +++  R+   GL    Y+WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  277 VLEERDDDLAFITERVEKTTISKLEGFINSPFERIEYTDAIKLLE---RSGKKFDFPVEWGLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEMLDIRMAQFGLDPAHYQWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_VIBCH (Asparaginyl-tRNA synthetase OS=Vibrio cholerae GN=asnS PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.053e-53
Identity = 103/185 (55.68%), Postives = 128/185 (69.19%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            DD+EF     +   I RL     + F ++ YT            GK FE  VEWGIDLASEHER+L E  F+ PVIV NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER D++ +R+ + G+  E  +WY DLRR+GTV H+GFGLGFER++ + TG+ N+RDVIPFPR P  A
Sbjct:  283 DDLEFFNDRINNEVIARLEQFVESDFAQVDYTDAIEILKNC---GKTFEFPVEWGIDLASEHERFLAEEHFKAPVIVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_GEOSL (Asparaginyl-tRNA synthetase OS=Geobacter sulfurreducens GN=asnS PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.347e-53
Identity = 103/192 (53.65%), Postives = 135/192 (70.31%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD+C +DM F  ++ D+  + R+  VA + F  + Y           +    FE  VEWG+DL +EHERYLTE     PV V NYP+ IKAFYMR NDD +TVAAMD+LVPKVGE+IGGSQREERYD+++SR+ + G+  E   WYLD RR+G+  H+GFGLGFER+I++ TG++NIRDVIPFPR P  A+
Sbjct:  272 VLDNCAEDMAFFNEHVDRGLLARVEQVAGSSFAMMEY---GVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGGPVFVVNYPQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWWYLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAE 460          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ALKOO (Asparaginyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=asnS PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.347e-53
Identity = 101/194 (52.06%), Postives = 140/194 (72.16%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++++  ++MEF     DK  ++RL  VA++ F R+TYT          K G+ FE  V WG DL +EHERYLTE  F+KPV V +YPK IKAFYM+LN+D KTVAAMD+LVP +GE+IGGSQRE+   +++ R++ MGL  E Y WYL+LR++G+ +H+G+GLGFER I++ TG+ NIRDVI FPR P  A+
Sbjct:  272 NYVMENAPEEMEFFNSFVDKGLLDRLNNVATSDFGRVTYTEAIEILQ---KSGETFEYPVAWGTDLQTEHERYLTEKVFKKPVFVTDYPKDIKAFYMKLNEDGKTVAAMDLLVPGIGEIIGGSQREDNLALLEERMDAMGLDKEEYWWYLELRKYGSARHAGYGLGFERAIMYLTGMSNIRDVISFPRTPKSAE 462          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_PSEHT4.277e-5553.40Asparaginyl-tRNA synthetase OS=Pseudoalteromonas h... [more]
SYN_MYXXD5.586e-5554.97Asparaginyl-tRNA synthetase OS=Myxococcus xanthus ... [more]
SYN_BUCAP7.295e-5555.21Asparaginyl-tRNA synthetase OS=Buchnera aphidicola... [more]
SYN_PSYIN9.527e-5556.99Asparaginyl-tRNA synthetase OS=Psychromonas ingrah... [more]
SYN_ANASP1.244e-5455.73Asparaginyl-tRNA synthetase OS=Anabaena sp. (strai... [more]
SYN_SYNY31.625e-5453.37Asparaginyl-tRNA synthetase OS=Synechocystis sp. (... [more]
SYN_XYLFT1.053e-5352.08Asparaginyl-tRNA synthetase OS=Xylella fastidiosa ... [more]
SYN_VIBCH1.053e-5355.68Asparaginyl-tRNA synthetase OS=Vibrio cholerae GN=... [more]
SYN_GEOSL2.347e-5353.65Asparaginyl-tRNA synthetase OS=Geobacter sulfurred... [more]
SYN_ALKOO2.347e-5352.06Asparaginyl-tRNA synthetase OS=Alkaliphilus oremla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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