FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XYLFA (Asparaginyl-tRNA synthetase OS=Xylella fastidiosa GN=asnS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.917e-53
Identity = 99/192 (51.56%), Postives = 134/192 (69.79%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD+ F+ +  +K+ I++L     +PFERI YT          + GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +++  R+   GL    Y+WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR P  A+
Sbjct:  277 VLEERTDDLAFITERVEKTTISKLEGFIKSPFERIEYTDAIKLLE---RSGKKFDFPVEWGLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEMLDIRMAQFGLDPTHYQWYRDFRRYGSVPHAGFGLGFERLMVYVCGLSNIRDAIPYPRAPSSAE 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_RHOBA (Asparaginyl-tRNA synthetase OS=Rhodopirellula baltica GN=asnS PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 105/191 (54.97%), Postives = 132/191 (69.11%), Query Frame = 3
Query:   12 LDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            L HC +DM+F  +  +K  I++L+ V   PFE +TYT          ++   FE  V WG DL +EHERYLT V    PVI+ +YP  IK FYMR++DD KTVAAMDVLVP VGE+IGGSQREER DV++ R+ + GL    Y WY+DLRR+GTV H+GFGLG ER + + TG+ NIRDVIPFPR PG A+
Sbjct:  303 LSHCGEDMDFFNERIEKGKIDQLKSVIEKPFEHMTYTDAVERLLACDEK---FEYPVNWGTDLQAEHERYLTSV-VGGPVILTDYPSSIKPFYMRVSDDGKTVAAMDVLVPGVGEIIGGSQREERLDVLQRRMAEGGLDESEYWWYVDLRRYGTVPHAGFGLGLERAVQYVTGMANIRDVIPFPRTPGNAE 489          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_GEOMG (Asparaginyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 106/192 (55.21%), Postives = 133/192 (69.27%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD C +DM F   + DK  I R+  VA++ F  + Y           K    FE  VEWG+DL +EHERYLTE     PV V NYPK IKAFYMR+NDD KTVAAMD+LVPKVGE+IGGSQREER  V++ R+ ++G+  E   WYLD RR+G+  H+GFGLGFER+I++ TG++NIRDVIPFPR P  A+
Sbjct:  272 VLDACGEDMAFFNDHIDKGLIARVEQVANSSFAIMEY---GEAIERLKKATVTFEYPVEWGLDLQTEHERYLTEQVVGGPVFVINYPKHIKAFYMRVNDDNKTVAAMDLLVPKVGEIIGGSQREERLPVLEGRMAEVGVNPEGLWWYLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAE 460          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LAWIP (Asparaginyl-tRNA synthetase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.521e-52
Identity = 102/183 (55.74%), Postives = 129/183 (70.49%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 575
            DD+  + K      I  L  + + PF R +Y           K+   FE  V +G+DL SEHE+YLTE  F+ PVI+++YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQREER D + SRI ++G  +E Y WYLDLRRFGTV H+GFGLGFER+++  TG+ NIRDV+PFPR PG
Sbjct:  272 DDIMLLDKYVQPGLIKALENIIAKPFIRCSYHDAITILLSSHKD---FEFPVTFGLDLQSEHEKYLTEEYFKHPVIIFDYPKEIKAFYMRQNDDEETVAAMDLLVPRIGELIGGSQREERLDNLLSRIRELGQSIEEYWWYLDLRRFGTVPHAGFGLGFERLVMLLTGVSNIRDVLPFPRTPG 451          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAHCH (Asparaginyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.521e-52
Identity = 107/191 (56.02%), Postives = 130/191 (68.06%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +LD   DDM F A+  +   ++RL  +    F RI Y+            GK FE  V+WG+DL SEHERYL E     PVIV NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQRE+R DV+ +RI DM    E + WY DLRR+G+V H+GFGLGFER+I + TG++N+RDVIPFPR P  A
Sbjct:  277 VLDERSDDMAFFAERINPDVVSRLENMVDKEFVRIDYSEAIKILQNC---GKKFEYPVQWGLDLQSEHERYLAETHVGAPVIVMNYPKEIKAFYMRLNDDDKTVAAMDVLAPGIGEIIGGSQREDRLDVLDARIGDMHHKEELW-WYRDLRRYGSVPHAGFGLGFERLIAYVTGMENVRDVIPFPRTPDNA 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_GEOUR (Asparaginyl-tRNA synthetase OS=Geobacter uraniireducens (strain Rf4) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.521e-52
Identity = 104/192 (54.17%), Postives = 132/192 (68.75%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD+C +DM F  +  DK  + R+R VA + F  + YT          K    F   VEWG+DL SEHERY+TE     PV + NYPK IKAFYMR NDD KTVAAMD+LVPKVGE+IGGSQREER D++  R+  MG+  +   WYLD RR+G+  H+GFGLGFER++++ TG++NIRDVIPFPR P  A+
Sbjct:  272 VLDNCGEDMAFFNEQIDKGLLERVRAVADSSFAVMEYTEAITHLK---KAKVPFAFPVEWGLDLQSEHERYITEKVVGGPVFLVNYPKDIKAFYMRQNDDGKTVAAMDLLVPKVGEIIGGSQREERLDLLLERMAQMGINEDGLWWYLDSRRWGSCPHAGFGLGFERLLMYLTGMENIRDVIPFPRTPRHAE 460          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_IDILO (Asparaginyl-tRNA synthetase OS=Idiomarina loihiensis GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.987e-52
Identity = 100/186 (53.76%), Postives = 127/186 (68.28%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DDM F A+  +   I+RL  + +  F  + YT          ++   FE  VEWG+DL SEHERYL E     P+I+ NYP+ IKAFYMR N+D KTVAAMDVL P +GE+IGGS REER D++  RI++M LP E Y +Y DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  283 DDMAFFAERINSDAISRLEAIVNNDFVHMDYTDAIEILKNCDRK---FEYAVEWGVDLQSEHERYLAEEHVGAPIILKNYPRDIKAFYMRQNEDGKTVAAMDVLAPGIGEIIGGSAREERLDILDQRIDEMNLPKEEYGFYRDLRRYGTVPHAGFGLGFERLVAYVTGVQNIRDVIPFPRAPKSAE 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BORAP (Asparaginyl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.595e-52
Identity = 99/188 (52.66%), Postives = 130/188 (69.15%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 572
            +L+ C  DM+F+    +K  I +L  V ++ FE ITYT             K+FE K  WGIDL +EHER+LTE  F+KPV+V +YPK  KAFYM++N D KTV  MDVLVPK+GE+IGGS+RE+    +++RI+++ L +E   WYLDLRRFG+  HSGFGLG ER + ++TGI NIRD IPFPR P
Sbjct:  273 ILNECSQDMDFLENYIEKGLIKKLENVINSNFEVITYTKAIEILE---SSKKNFEIKPYWGIDLQTEHERFLTEETFKKPVVVIDYPKNFKAFYMKINKDNKTVKGMDVLVPKIGEIIGGSEREDNLQKLENRIKELNLSIEHLNWYLDLRRFGSTPHSGFGLGLERFVQYSTGISNIRDSIPFPRTP 457          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BAUCH (Asparaginyl-tRNA synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=asnS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.595e-52
Identity = 102/185 (55.14%), Postives = 129/185 (69.73%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            DD+ F A+  +K+ I RL    S+ F +I YT          ++   F++ V WG+DL +EHERYL +  FQ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER   +  R+ D GL +E Y WY DLR +GTV HSGFGLG ER++++ TG+ NIRDVIPFPR P +A
Sbjct:  284 DDINFFAEQINKNIIKRLEQFISSNFAQIDYTEAIDILQNCKQK---FDHTVFWGMDLFAEHERYLADKHFQAPVVVTNYPKDIKAFYMRINDDGKTVAAMDVLAPGIGEIIGGSQREERLAKLDQRLADRGLNIEDYWWYRDLRSYGTVPHSGFGLGLERLMIYITGMHNIRDVIPFPRNPRQA 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ACHLI (Asparaginyl-tRNA synthetase OS=Acholeplasma laidlawii (strain PG-8A) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.389e-52
Identity = 102/189 (53.97%), Postives = 134/189 (70.90%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 572
            ++L+H  ++M F  K  +K  + +L  +  + F+RIT+           K    FEN+ + G DLA EHERYLTE  F  PV V ++PK IKAFYMRLNDD KTVAA+D+LVP  GEL+GGSQREER DV+  R+EDM +P++  +WYLDLRR+G V+ SGFGLGFER +++ TG++NIRDVIPFPR P
Sbjct:  273 YVLEHAKEEMAFFDKFVEKGLLTKLDNLLKSSFKRITHEEAINILL---KSNHKFENQPKHGEDLAKEHERYLTEKAFHGPVFVKDWPKDIKAFYMRLNDDQKTVAAVDLLVPGSGELVGGSQREERLDVLLKRMEDMHVPVKDLDWYLDLRRYGGVQTSGFGLGFERYLIYVTGVENIRDVIPFPRTP 458          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_XYLFA8.917e-5351.56Asparaginyl-tRNA synthetase OS=Xylella fastidiosa ... [more]
SYN_RHOBA1.165e-5254.97Asparaginyl-tRNA synthetase OS=Rhodopirellula balt... [more]
SYN_GEOMG1.165e-5255.21Asparaginyl-tRNA synthetase OS=Geobacter metallire... [more]
SYN_LAWIP1.521e-5255.74Asparaginyl-tRNA synthetase OS=Lawsonia intracellu... [more]
SYN_HAHCH1.521e-5256.02Asparaginyl-tRNA synthetase OS=Hahella chejuensis ... [more]
SYN_GEOUR1.521e-5254.17Asparaginyl-tRNA synthetase OS=Geobacter uraniired... [more]
SYN_IDILO1.987e-5253.76Asparaginyl-tRNA synthetase OS=Idiomarina loihiens... [more]
SYN_BORAP2.595e-5252.66Asparaginyl-tRNA synthetase OS=Borrelia afzelii (s... [more]
SYN_BAUCH2.595e-5255.14Asparaginyl-tRNA synthetase OS=Baumannia cicadelli... [more]
SYN_ACHLI3.389e-5253.97Asparaginyl-tRNA synthetase OS=Acholeplasma laidla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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