FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BUCAI (Asparaginyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=asnS PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.685e-49
Identity = 101/186 (54.30%), Postives = 125/186 (67.20%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            LL  C  D+ F+    + + ++RL       F RI Y            +   F N V  GIDL+SEHER+L E  F+ PVIV NYPK +KAFYMRLN+D KTVAA+D+LVP VGELIGGSQREER  ++  R+ ++GL  E Y WY DLRR+GTV HSGFG+GFER+I + TGI NIRD+IPFPR
Sbjct:  277 LLKKCITDINFLENYTNSNIVDRLEKFLLVDFVRIDYVEVINILLDSKIK---FNNSVFLGIDLSSEHERFLVENYFKIPVIVKNYPKELKAFYMRLNNDKKTVAAIDILVPNVGELIGGSQREERIAILDERLLELGLKKEDYWWYRDLRRYGTVPHSGFGMGFERLISYFTGITNIRDLIPFPR 459          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC2_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.877e-48
Identity = 95/193 (49.22%), Postives = 131/193 (67.88%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L++  +DM+F++K  DK+   RL   AS+   R +YT               FE K EWG+ L +EH  YLT+  ++ PVIV+ YPK IK FY+RLNDD KTVAA D++VPKVG +I GSQ EER++++ +RI + G   E +EWYLDLRR GTVKHSG  L  E+M+L+ATG+ +I+D IPFPR  G+A+
Sbjct:  447 YVLENRDEDMKFISKRVDKTITTRLEATASSSLLRFSYTEVISLLQKATTT--KFETKPEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFYVRLNDDKKTVAAFDLVVPKVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRHGTVKHSGISLSMEQMLLYATGLPDIKDAIPFPRSWGKAN 637          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PHYAS (Asparaginyl-tRNA synthetase OS=Phytoplasma australiense GN=asnS PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.064e-48
Identity = 98/180 (54.44%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   30 DMEFMAKNYDKSCINRLR-MVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            D+EF+ +      +  L+ +V    F  ITY             G  FENKV +G DLA+EHE++LTE  FQKPV + ++PK IKAFYM+ N D KTVAAMD+L+P+VGELIGGSQREE   V+  +++ M +P + +EWYLDLRRFG+  HSGFGLGFER++LF TG+DNIRDVI FPR
Sbjct:  279 DIEFLDQTVRNGLLQELKNVVQEKEFLVITYQKAIEILA---SSGVAFENKVFYGSDLATEHEKFLTEKHFQKPVFIIDWPKEIKAFYMKNNPDQKTVAAMDLLIPRVGELIGGSQREENLAVLIEKMQQMKIPQKEFEWYLDLRRFGSCIHSGFGLGFERLLLFLTGLDNIRDVIAFPR 455          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BUCBP (Asparaginyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=asnS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47
Identity = 95/193 (49.22%), Postives = 131/193 (67.88%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEW-GIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD C  D+ F  +N D+    RL+  +S  F +I Y            +   F++KV + G++L+S+HER+L E  F+ P+++ NYPK +KAFYMR+NDD KTV+AMDVLVP VGE+IGGS+REER +V+  R  ++ L  E Y WY DLR++GT+ HSGFGLGFER++ +  GI NIRDV PFPR   +AD
Sbjct:  277 ILDKCVIDINFFRENVDEKIFCRLKDFSSKQFFQIEYKEAINILI----KSNRFDHKVMFIGMELSSDHERFLVEEYFKFPLVITNYPKSLKAFYMRVNDDNKTVSAMDVLVPGVGEIIGGSEREERLNVLDRRFFELNLNKEDYWWYRDLRKYGTIPHSGFGLGFERLLSYILGIKNIRDVCPFPRTAYKAD 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ONYPE (Asparaginyl-tRNA synthetase OS=Onion yellows phytoplasma GN=asnS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.599e-47
Identity = 96/186 (51.61%), Postives = 124/186 (66.67%), Query Frame = 3
Query:   12 LDHCFDDMEFMAKNYDKSCINRLRMVASTP-FERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L+  + D+EF+ K      I  L+ ++    F  + Y           K    FEN + +G DLA+EHE+YLTE  F+KPV + ++PK IKAFYM+ N D KTVAAMD+LVP+VGELIGGSQREE   V+  ++  M +P +  EWYLDLRRFG   HSGFGLGFER+++F TG+DNIRDVI FPR
Sbjct:  317 LEQNYQDIEFLDKTEKNCLIEELKNISEEKEFLTVKYEQALEILQ---KSNTKFENPLFYGADLATEHEKYLTETHFKKPVFIVDWPKEIKAFYMKNNPDQKTVAAMDLLVPRVGELIGGSQREENLSVLIEKMNQMKIPQKDLEWYLDLRRFGGCIHSGFGLGFERLLIFLTGLDNIRDVIAFPR 499          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_TREPS (Asparaginyl-tRNA synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=asnS PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.312e-47
Identity = 94/169 (55.62%), Postives = 115/169 (68.05%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            L  VA  P  R+TYT            G+ FE  V WG DL SEHE +LTE  F  PVIVY+YPK IKAFYM+LN D  TV +MD+LVP +GE++GGS+REE+++V+ +RI   G     Y WY DLRRFGT  H+GFGLGFER++ + TG+ NIRDVIPFPR P  AD
Sbjct:  357 LEDVARAPATRLTYTEAIKLLE---NSGRSFEFPVRWGCDLQSEHECFLTEEVFHGPVIVYDYPKEIKAFYMKLNADGTTVRSMDLLVPGLGEIMGGSEREEQFEVLCARIRASGFDPHDYRWYTDLRRFGTAPHAGFGLGFERLLQYVTGLGNIRDVIPFPRTPRTAD 522          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_TREPA (Asparaginyl-tRNA synthetase OS=Treponema pallidum GN=asnS PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.312e-47
Identity = 94/169 (55.62%), Postives = 115/169 (68.05%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            L  VA  P  R+TYT            G+ FE  V WG DL SEHE +LTE  F  PVIVY+YPK IKAFYM+LN D  TV +MD+LVP +GE++GGS+REE+++V+ +RI   G     Y WY DLRRFGT  H+GFGLGFER++ + TG+ NIRDVIPFPR P  AD
Sbjct:  357 LEDVARAPATRLTYTEAIKLLE---NSGRSFEFPVRWGCDLQSEHECFLTEEVFHGPVIVYDYPKEIKAFYMKLNADGTTVRSMDLLVPGLGEIMGGSEREEQFEVLCARIRASGFDPHDYRWYTDLRRFGTAPHAGFGLGFERLLQYVTGLGNIRDVIPFPRTPRTAD 522          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_AYWBP (Asparaginyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=asnS PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.739e-46
Identity = 95/186 (51.08%), Postives = 123/186 (66.13%), Query Frame = 3
Query:   12 LDHCFDDMEFMAKNYDKSCINRLRMVASTP-FERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L+  + D+EF+ K      I  L+ +A    F  + Y           K    FEN + +G+DLA+EHE+YLTE  F+KPV + ++PK IKAFYM+ N D KTVAAMD+L P+VGELIGGSQREE   V+  ++  M +  +  EWYLDLRRFG   HSGFGLGFER+++F TG+DNIRDVI FPR
Sbjct:  314 LEQNYQDIEFLDKTEKNGLIEELQNIAEEKEFLTVKYEQALEILQ---KSNTKFENPLFYGVDLATEHEKYLTEKHFKKPVFIVDWPKEIKAFYMKNNPDQKTVAAMDLLFPRVGELIGGSQREENLSVLIEKMNQMKISQKDLEWYLDLRRFGGCIHSGFGLGFERLLIFLTGLDNIRDVIAFPR 496          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_MYCGA (Asparaginyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=asnS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.056e-45
Identity = 89/196 (45.41%), Postives = 130/196 (66.33%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENK-VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE--PYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L D+   ++E+  +N +   I++L  V +  F R+ Y            EG  FE K + +G+DL SEHERY+ E  F++PV V NYPK +KAFYM+LNDD +TVAA D+L P +GE+ GGSQRE+ Y+ + +R  ++ +  E    +WYLDLR++G  + +GFGLGFER++++ TG DNIRD IPFPR+ G+ D
Sbjct:  261 YLFDYAKPELEWCNENLEPGLIDKLNNVINNDFPRVEYREVIEILKKAVAEGVEFEVKDIHFGMDLKSEHERYICEKVFKRPVFVINYPKDVKAFYMKLNDDNQTVAATDLLAPGIGEICGGSQREDSYNKLLTRCLELDIDPEFNNLQWYLDLRKYGYYRSAGFGLGFERLLMYVTGCDNIRDAIPFPRFHGQLD 456          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_WIGBR (Asparaginyl-tRNA synthetase OS=Wigglesworthia glossinidia brevipalpis GN=asnS PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.801e-45
Identity = 87/186 (46.77%), Postives = 127/186 (68.28%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +L+ C +D+ F+ K  + + I +L+         + Y           K   +F  +++WG+DL+SEHERYL+++ ++  +++ NYPK IKAFYMRLN D KTVAA D+L+P +GE+IGGS+RE+R + + S I++  L  + YEWY DLR++GTV HSGFGLG ER+I + TG+ NIRDVIPFPR
Sbjct:  277 VLNKCLNDLIFLEKKLNINIIKKLKNFIEKKLIEVEYCEAIRILKNCEK---NFRIQLKWGMDLSSEHERYLSDLYYKSHIVIKNYPKEIKAFYMRLNKDKKTVAAADILLPGIGEIIGGSEREDRLEYLDSMIKEKRLIHKNYEWYRDLRKYGTVPHSGFGLGIERLISYVTGLKNIRDVIPFPR 459          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_BUCAI2.685e-4954.30Asparaginyl-tRNA synthetase OS=Buchnera aphidicola... [more]
SYNC2_ARATH3.877e-4849.22Asparaginyl-tRNA synthetase, cytoplasmic 2 OS=Arab... [more]
SYN_PHYAS5.064e-4854.44Asparaginyl-tRNA synthetase OS=Phytoplasma austral... [more]
SYN_BUCBP4.287e-4749.22Asparaginyl-tRNA synthetase OS=Buchnera aphidicola... [more]
SYN_ONYPE5.599e-4751.61Asparaginyl-tRNA synthetase OS=Onion yellows phyto... [more]
SYN_TREPS7.312e-4755.62Asparaginyl-tRNA synthetase OS=Treponema pallidum ... [more]
SYN_TREPA7.312e-4755.62Asparaginyl-tRNA synthetase OS=Treponema pallidum ... [more]
SYN_AYWBP4.739e-4651.08Asparaginyl-tRNA synthetase OS=Aster yellows witch... [more]
SYN_MYCGA1.056e-4545.41Asparaginyl-tRNA synthetase OS=Mycoplasma gallisep... [more]
SYN_WIGBR1.801e-4546.77Asparaginyl-tRNA synthetase OS=Wigglesworthia glos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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