FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACGA (Asparaginyl-tRNA synthetase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=asnS PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.982e-32
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 3
Query:  180 VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            ++WG D  +  E Y++E +F +PV + NYP  IK FYM+ N D+ K     DV+ P+  GE+ GGS+RE  Y+++K +IE+ GL LE Y+WYLDLR+FG V HSGFG+GFER I +   +D+IR+ IPFPR   R
Sbjct:  296 IKWGDDFGAPDEGYISE-QFDRPVFIVNYPTTIKPFYMKKNPDNPKEYLCADVIAPEGYGEIFGGSEREGNYEILKKQIEEAGLNLEDYQWYLDLRKFGGVPHSGFGMGFERTIAWICKLDHIREAIPFPRLINR 429          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ENTFA (Asparaginyl-tRNA synthetase OS=Enterococcus faecalis GN=asnS PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.982e-32
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            L    S PF+RITY           +E  +  + +EWG D  S HE +++   +  P  + NYPK IKAFYM+ +   + V    D++ P+  GE+IGGS+R   YD +K ++ + GL  E Y WYLDLR++G+V HSGFGLG ER + F TG ++IR+ IPFPR   R
Sbjct:  282 LEKYVSEPFKRITYDDAIELLQK--EEANNDYDHIEWGEDFGSPHETFISNY-YGVPTFILNYPKAIKAFYMKPHPTREDVVICADLIAPEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAVTFITGNEHIREAIPFPRMLNR 447          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SYMTH (Asparaginyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=asnS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 73/162 (45.06%), Postives = 101/162 (62.35%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF RITYT          K G  +E  +EWG D  + HE  LT+ +F+KPV V  +P  +KAFYM+ + ++   V   D+L P+  GE+IGGSQR    +++K R E+ GL +  Y WY DLRRFG+V HSGFGLG ER + +  G++++R+ IPFPR   R
Sbjct:  275 PFPRITYTEAVEMLKKLHKPGDEWE-PIEWGEDFGAPHETVLTQ-QFEKPVFVEKFPVKVKAFYMQPDPENPDVVLGADLLAPEGYGEIIGGSQRIHDPELLKRRFEEHGLDMNTYGWYYDLRRFGSVPHSGFGLGIERTVAWICGLEHVRETIPFPRLLNR 434          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN1_LACPL (Asparaginyl-tRNA synthetase 1 OS=Lactobacillus plantarum GN=asnS1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 77/190 (40.53%), Postives = 113/190 (59.47%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN---DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++DHC  ++  + ++     +  L+     PF R++Y            +   F+  V+WG+D  S  E +L E  F +PV V NYPK IKAFYM+ +   DD+  V A D+L P+  GE+IGGS+R   YD +K R+   G  L+ YEWYLDLR++G+V HSGFG+G ER + + T  D++R+ IPFPR
Sbjct:  250 VIDHCPHELAVLDRD-----VATLQKYTKLPFPRVSYDDAITLL-----QANGFD--VDWGVDFGSPEETFLAE-HFDQPVFVLNYPKAIKAFYMQAHPTRDDV--VIAADLLAPEGYGEIIGGSERSTDYDYLKERLLASGQDLQDYEWYLDLRKYGSVPHSGFGMGLERFLAWITLQDHVRETIPFPR 424          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LEPIN (Asparaginyl-tRNA synthetase OS=Leptospira interrogans GN=asnS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 67/131 (51.15%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  180 VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            + WG D+ SE E+ LT V+F  PV +  YP+  KAFYM++N +D +TV   D++ P  VGE+IGGS+REE Y+ I  R+++  LP+E Y+WYLDLR++G+V HSGFGLG ER+I +  G+ ++R+ IPFPR
Sbjct:  299 IVWGDDINSEREQLLT-VEFGGPVFIQKYPREAKAFYMKVNPEDPRTVLNADLIAPDGVGEIIGGSEREENYENIVQRLKEEKLPVESYDWYLDLRKYGSVPHSGFGLGSERLIAWICGLAHVRECIPFPR 428          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LEPIC (Asparaginyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=asnS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 67/131 (51.15%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  180 VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            + WG D+ SE E+ LT V+F  PV +  YP+  KAFYM++N +D +TV   D++ P  VGE+IGGS+REE Y+ I  R+++  LP+E Y+WYLDLR++G+V HSGFGLG ER+I +  G+ ++R+ IPFPR
Sbjct:  299 IVWGDDINSEREQILT-VEFGGPVFIQKYPREAKAFYMKVNPEDPRTVLNADLIAPDGVGEIIGGSEREENYENIVQRLKEEKLPVESYDWYLDLRKYGSVPHSGFGLGSERLIAWICGLAHVRECIPFPR 428          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACC3 (Asparaginyl-tRNA synthetase OS=Lactobacillus casei (strain ATCC 334) GN=asnS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31
Identity = 80/193 (41.45%), Postives = 113/193 (58.55%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN--DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +LD+C   +  + ++ +      L+     P+ RITY            +       V++G D  S  E YL++ +F +PV V NYPK IK FYM  +  DD + V A D+L P+  GE+IGGS+RE  YD +K+ IE  GL L+ YEWYLDLR++G+V HSGFGLG ER I +   +D++R+ IPFPR   R
Sbjct:  251 VLDNCAYPLHLLDRDPEV-----LKQYTKLPYPRITYKQAIKMLQDAGMD-------VKYGDDFGSPEETYLSD-QFDQPVFVLNYPKTIKPFYMLTDPEDDQQYVCA-DMLAPEGYGEIIGGSERETDYDTLKNAIEHAGLDLDEYEWYLDLRKYGSVPHSGFGLGLERAITWVCKLDHLREAIPFPRMINR 429          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PYRFU (Asparaginyl-tRNA synthetase OS=Pyrococcus furiosus GN=asnS PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 3
Query:  180 VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            V+WG DL ++ ER LTE +F +P  VY YPK IKAFYM+ + +D + V A D+L P+  GE+IGGSQRE+ Y+ + +RI + G+  + YEWYLDLR++G+V HSGFGLG ER++ +   +D+IR    FPR P R
Sbjct:  298 VQWGDDLGADEERVLTE-EFDRPFFVYGYPKQIKAFYMKEDPNDPRKVLAADMLAPEGYGEIIGGSQREDDYEKLLNRILEEGMDPKDYEWYLDLRKYGSVPHSGFGLGVERLVAWVLKLDHIRWASLFPRTPAR 431          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ACIBL (Asparaginyl-tRNA synthetase OS=Acidobacteria bacterium (strain Ellin345) GN=asnS PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 71/159 (44.65%), Postives = 102/159 (64.15%), Query Frame = 3
Query:   96 TPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            TPF RI+Y            +G+  E++ EWG DL S  E Y++  KF +PV+++ YP  +KAFYM  + +   VA  +DVL P+  GE+IGGSQR   Y+ + +RI +  LP E ++WYLDLR+FG V HSGFG+G ER + +  G+D++R+ IPF R
Sbjct:  279 TPFPRISYDEAVQMLQEGHAKGE-LESRFEWGGDLGSPDETYISS-KFDRPVMIHRYPVEVKAFYMEPDPNNSKVALCVDVLAPEGYGEVIGGSQRMGSYEKLLARIHEHQLPEESFKWYLDLRKFGGVPHSGFGMGIERAVAWICGLDHVRETIPFAR 435          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACH4 (Asparaginyl-tRNA synthetase OS=Lactobacillus helveticus (strain DPC 4571) GN=asnS PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 3
Query:  183 EWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +WG D  +  E Y++E ++ +PV + NYP  IK FYM+ N D+ K     DV+ P+  GE+ GGS+RE  Y+V++ +I D GL LE Y+WYLDLR+FG V HSGFG+GFER I +   +D+IR+ IPFPR   R
Sbjct:  297 KWGDDFGAPDEGYISE-QYDRPVFIVNYPTSIKPFYMKKNPDNPKEYLCADVIAPEGYGEIFGGSEREGNYEVLEQQIIDAGLNLEDYQWYLDLRKFGGVPHSGFGMGFERTIAWVCHLDHIREAIPFPRLINR 429          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_LACGA2.982e-3249.63Asparaginyl-tRNA synthetase OS=Lactobacillus gasse... [more]
SYN_ENTFA2.982e-3242.60Asparaginyl-tRNA synthetase OS=Enterococcus faecal... [more]
SYN_SYMTH3.895e-3245.06Asparaginyl-tRNA synthetase OS=Symbiobacterium the... [more]
SYN1_LACPL3.895e-3240.53Asparaginyl-tRNA synthetase 1 OS=Lactobacillus pla... [more]
SYN_LEPIN6.644e-3251.15Asparaginyl-tRNA synthetase OS=Leptospira interrog... [more]
SYN_LEPIC6.644e-3251.15Asparaginyl-tRNA synthetase OS=Leptospira interrog... [more]
SYN_LACC31.133e-3141.45Asparaginyl-tRNA synthetase OS=Lactobacillus casei... [more]
SYN_PYRFU2.525e-3151.11Asparaginyl-tRNA synthetase OS=Pyrococcus furiosus... [more]
SYN_ACIBL2.525e-3144.65Asparaginyl-tRNA synthetase OS=Acidobacteria bacte... [more]
SYN_LACH44.307e-3149.25Asparaginyl-tRNA synthetase OS=Lactobacillus helve... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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