FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHESH (Asparaginyl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.738e-59
Identity = 113/191 (59.16%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DD+EF A+  DK+ I+RL    S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+E+M L  E Y WY D+RR+GTV HSGFGLGFER++ + TG+ NIRDVIPFPR P  A
Sbjct:  277 VLEERRDDLEFFAQRVDKTVIDRLESFVSSDFAQVDYTDAVEILKSC---GKKFEYPVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLEEMNLSKEDYWWYRDMRRYGTVPHSGFGLGFERLVSYVTGVSNIRDVIPFPRAPKSA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SERP5 (Asparaginyl-tRNA synthetase OS=Serratia proteamaculans (strain 568) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.738e-59
Identity = 111/191 (58.12%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I+RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGG+QREER DV+  R+E MGL  E Y WY DLRR+GTV H+GFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERMDDMQFFAERVDKDAIDRLQRFVTSDFAQVDYTEAVEILIA---SGQTFENPVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDQRLEAMGLNKEDYWWYRDLRRYGTVPHAGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHELP (Asparaginyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 114/200 (57.00%), Postives = 140/200 (70.00%), Query Frame = 3
Query:    9 LLDHCF--------DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L +CF        DD+EF A+  DK+ I RL    ++ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGG+QREER DV+ +R+++MGL  E Y WY DLRR+GTV HSGFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  269 MLKYCFRAVLNERRDDLEFFAQRVDKTVIERLESFVNSDFAQVDYTDAIEILKSC---GKKFEFDVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDTRLDEMGLSKEDYWWYRDLRRYGTVPHSGFGLGFERLVSYVTGVSNIRDVIPFPRAPKSAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAES2 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 2336) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 113/186 (60.75%), Postives = 136/186 (73.12%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F  K+ DK+ I RL+   ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  RI +MGL  E Y WY DLRR+GTV H+GFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  284 DDLKFFEKHVDKNVITRLKDFINSDFAQIDYTDAIDILL---KSGKAFEFPVSWGIDLSSEHERYLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRIAEMGLKAEDYWWYRDLRRYGTVPHAGFGLGFERLIVYVTGVQNIRDVIPFPRTPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAES1 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 129Pt) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 113/186 (60.75%), Postives = 136/186 (73.12%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F  K+ DK+ I RL+   ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  RI +MGL  E Y WY DLRR+GTV H+GFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  284 DDLKFFEKHVDKNVITRLKDFINSDFAQIDYTDAIDILL---KSGKAFEFPVSWGIDLSSEHERYLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRIAEMGLKAEDYWWYRDLRRYGTVPHAGFGLGFERLIVYVTGVQNIRDVIPFPRTPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_AERHH (Asparaginyl-tRNA synthetase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 112/186 (60.22%), Postives = 135/186 (72.58%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD+EF A++ DK  I RL    ++ F +I YT            GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER++++ TG+ N+RDVIPFPR P  A+
Sbjct:  283 DDLEFFAQHVDKDAIGRLERFVASDFAQIDYTDAIEVLKNC---GKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLVVYVTGMGNVRDVIPFPRTPRTAE 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_MANSM (Asparaginyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 113/192 (58.85%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD++F  K+ DK  INRL    ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLKERMDDLKFFEKHIDKDVINRLERFVASDFAQIDYTDAIDVLL---KSGKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRTPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_YERPS (Asparaginyl-tRNA synthetase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_YERPP (Asparaginyl-tRNA synthetase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_YERPN (Asparaginyl-tRNA synthetase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_SHESH3.738e-5959.16Asparaginyl-tRNA synthetase OS=Shewanella sedimini... [more]
SYN_SERP53.738e-5958.12Asparaginyl-tRNA synthetase OS=Serratia proteamacu... [more]
SYN_SHELP4.882e-5957.00Asparaginyl-tRNA synthetase OS=Shewanella loihica ... [more]
SYN_HAES24.882e-5960.75Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]
SYN_HAES14.882e-5960.75Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]
SYN_AERHH4.882e-5960.22Asparaginyl-tRNA synthetase OS=Aeromonas hydrophil... [more]
SYN_MANSM6.376e-5958.85Asparaginyl-tRNA synthetase OS=Mannheimia succinic... [more]
SYN_YERPS8.327e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pseudotube... [more]
SYN_YERPP8.327e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pestis (st... [more]
SYN_YERPN8.327e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pestis bv.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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