FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACSK (Asparaginyl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=asnS PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.625e-31
Identity = 74/192 (38.54%), Postives = 113/192 (58.85%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +LDHC  +++ + ++     + +L  + + PF RITY            + K F++ + WG D  S HE  + E  F KPV +  YP+ +K FYM+   D   V    D++ P+  GE+IGGS+R   YD++K  +E   LPL+ Y WYLDLR++G+V HSGFGLG ER + + +G +++R+ IPFPR   R
Sbjct:  249 VLDHCQLELKQLGRD-----VTKLEAIKA-PFPRITYDEALDLL-----KEKGFDD-ISWGDDFGSPHETAIAE-HFDKPVFITRYPRSLKPFYMQPAPDRDDVVLCADLIAPEGYGEIIGGSERIHDYDLLKQELEKHNLPLDAYGWYLDLRKYGSVPHSGFGLGLERTVAWLSGTEHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_GEOTN (Asparaginyl-tRNA synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=asnS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.346e-31
Identity = 71/172 (41.28%), Postives = 105/172 (61.05%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            + +L +V   PF R+TY              K F + +EWG D  + HE  + E  F KPV + +YP  +K FYM+ + +   V    D++ P+  GE+IGGS+R   Y+++K R+E+  LPLE YEWYLDLR++G+V HSGFGLG ER + +  G++++R+ IPFPR   R
Sbjct:  264 VTKLELV-KPPFPRLTYDEAIKLL-----HDKGFTD-IEWGDDFGAPHETAIAE-SFDKPVFITHYPTSLKPFYMQPDPNRPDVVLCADLIAPEGYGEIIGGSERIHDYELLKQRLEEHHLPLEAYEWYLDLRKYGSVPHSGFGLGLERTVAWICGVEHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACS1 (Asparaginyl-tRNA synthetase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=asnS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.791e-30
Identity = 80/194 (41.24%), Postives = 111/194 (57.22%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR---LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +LD+C   ++ + ++ +      L+     P+ RI+Y           + GK  +  V+WG D  S  E YL E  F KPV V NYPK IK FYM+     DD+  V   D+L P+  GE+IGGS+R      ++ +I   GL ++ YEWYLDLRR+G+V HSGFGLG ER + + TG D+IR+ IPFPR   R
Sbjct:  250 VLDNCQYPLQILGRDTEV-----LKRYTELPYPRISYDEAIELLQ---QSGKFPD--VKWGEDFGSPEETYLAE-HFSKPVFVMNYPKAIKPFYMKPHPTRDDV--VICADMLAPEGYGEIIGGSERATDPKYLEEQIIKAGLDVKDYEWYLDLRRYGSVPHSGFGLGLERAVTWITGEDHIREAIPFPRLLNR 430          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACLS (Asparaginyl-tRNA synthetase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=asnS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.646e-30
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            L+    TPF+R++Y            +       VE G D  S HE +++   +  P  + NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS+RE  YD++  +I D GL  + Y+WYL+LR+FG+V H+GFGLG ERM+ F  G ++IR+ IPFPR   R
Sbjct:  277 LQKYIDTPFKRVSYDDAIDLLQAHENDDDTDYEHVEHGDDFGSPHETWISNY-YGVPTFIVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSERETDYDLLLKKIADFGLDPKDYDWYLELRKFGSVPHAGFGLGLERMVTFVAGTEHIREAIPFPRMINR 444          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRR6 (Asparaginyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=asnS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L+   + PF+RITY            +       +E G D  S HE +++   F  P  V NYP  IKAFYM+ +  + + V   D+L P+  GE+IGGS REE YD + ++++++G+    YE+YLDLR++GTV H GFG+G ERM+ FA G  +IR+ IPFPR
Sbjct:  277 LKRYIAEPFKRITYDQAIDLLQEHENDEDADYEHLEHGDDFGSPHETWISN-HFGVPTFVMNYPAAIKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREEDYDALVAKMDELGMDRTEYEFYLDLRKYGTVPHGGFGIGIERMVTFAAGTKHIREAIPFPR 440          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRPN (Asparaginyl-tRNA synthetase OS=Streptococcus pneumoniae GN=asnS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L+   + PF+RITY            +       +E G D  S HE +++   F  P  V NYP  IKAFYM+ +  + + V   D+L P+  GE+IGGS REE YD + ++++++G+    YE+YLDLR++GTV H GFG+G ERM+ FA G  +IR+ IPFPR
Sbjct:  277 LKRYIAEPFKRITYDQAIDLLQEHENDEDADYEHLEHGDDFGSPHETWISN-HFGVPTFVMNYPAAIKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREEDYDALVAKMDELGMDRTEYEFYLDLRKYGTVPHGGFGIGIERMVTFAAGTKHIREAIPFPR 440          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRP2 (Asparaginyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=asnS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L+   + PF+RITY            +       +E G D  S HE +++   F  P  V NYP  IKAFYM+ +  + + V   D+L P+  GE+IGGS REE YD + ++++++G+    YE+YLDLR++GTV H GFG+G ERM+ FA G  +IR+ IPFPR
Sbjct:  277 LKRYIAEPFKRITYDQAIDLLQEHENDEDADYEHLEHGDDFGSPHETWISN-HFGVPTFVMNYPAAIKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREEDYDALVAKMDELGMDRTEYEFYLDLRKYGTVPHGGFGIGIERMVTFAAGTKHIREAIPFPR 440          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACLM (Asparaginyl-tRNA synthetase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=asnS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            L+    TPF+R++Y            +       VE G D  S HE +++   +  P  + NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS+RE  YD++  +I D GL  + Y+WYL+LR+FG+V H+GFGLG ERM+ F  G ++IR+ IPFPR   R
Sbjct:  277 LQKYIDTPFKRVSYDDAIDLLQAHENDEDTDYEHVEHGDDFGSPHETWISNY-YGVPTFIVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSERETDYDLLLKKIADFGLDPKDYDWYLELRKFGSVPHAGFGLGLERMVTFVAGTEHIREAIPFPRMINR 444          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_LACLA (Asparaginyl-tRNA synthetase OS=Lactococcus lactis subsp. lactis GN=asnS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.761e-30
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            L+    TPF+R++Y            +       VE G D  S HE +++   +  P  + NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS+RE  YD++  +I D GL  + Y+WYL+LR+FG+V H+GFGLG ERM+ F  G ++IR+ IPFPR   R
Sbjct:  277 LQKYIDTPFKRVSYDAAIDLLQAHENDEDTDYEHVEHGDDFGSPHETWISNY-YGVPTFIVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSERETDYDLLLKKIADFGLDPKDYDWYLELRKFGSVPHAGFGLGLERMVTFVAGTEHIREAIPFPRMINR 444          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HERA2 (Asparaginyl-tRNA synthetase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=asnS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.219e-30
Identity = 73/194 (37.63%), Postives = 110/194 (56.70%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENK------VEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL-KTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +LD C +D++ + ++  K     L  +   PF RI+Y             G            +EWG D  + HE YL  + F KP+ +YNYP  +KAFYM+  +   + V   D++ P+  GE+IGGSQR    +++++RI + GL +  Y+WYLDLRR+G+V HSGFG+G ER + +  G  +IR+ IPFPR
Sbjct:  254 VLDRCEEDLKILERDTSK-----LENIVP-PFPRISYDEAIEKIKQGVAAGATVAPDNAPLADLEWGDDFGAPHETYLASL-FDKPLFIYNYPTKVKAFYMQPAEGRPEVVRCADLIAPEGYGEIIGGSQRIHDAELLEARIREHGLDVADYQWYLDLRRYGSVPHSGFGMGIERCVAWLAGTRHIREAIPFPR 440          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_BACSK5.625e-3138.54Asparaginyl-tRNA synthetase OS=Bacillus clausii (s... [more]
SYN_GEOTN7.346e-3141.28Asparaginyl-tRNA synthetase OS=Geobacillus thermod... [more]
SYN_LACS12.791e-3041.24Asparaginyl-tRNA synthetase OS=Lactobacillus saliv... [more]
SYN_LACLS3.646e-3040.24Asparaginyl-tRNA synthetase OS=Lactococcus lactis ... [more]
SYN_STRR64.761e-3041.82Asparaginyl-tRNA synthetase OS=Streptococcus pneum... [more]
SYN_STRPN4.761e-3041.82Asparaginyl-tRNA synthetase OS=Streptococcus pneum... [more]
SYN_STRP24.761e-3041.82Asparaginyl-tRNA synthetase OS=Streptococcus pneum... [more]
SYN_LACLM4.761e-3040.24Asparaginyl-tRNA synthetase OS=Lactococcus lactis ... [more]
SYN_LACLA4.761e-3040.24Asparaginyl-tRNA synthetase OS=Lactococcus lactis ... [more]
SYN_HERA26.219e-3037.63Asparaginyl-tRNA synthetase OS=Herpetosiphon auran... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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