FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN2_LACPL (Asparaginyl-tRNA synthetase 2 OS=Lactobacillus plantarum GN=asnS2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.122e-30
Identity = 72/194 (37.11%), Postives = 109/194 (56.19%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR---LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            ++DHC   ++ + ++     +  L+     P+ RI+Y              K  +  V+WG+D  S  E +L +  F +PV V NYPK IK FYM+     DD+  V   D+L P+  GE+IGGS+R   Y+ +  +I+  GL  + Y WYLDLR++G+V H+GFGLG ER + + T  D++R+ IPFPR   R
Sbjct:  251 VIDHCQYALDILGRD-----VETLKKYTKLPYPRISYDEAIELL-------KENDFDVDWGVDFGSPEETFLAD-HFDQPVFVLNYPKAIKPFYMKPHPTRDDV--VICADLLAPEGYGEIIGGSERATDYNYLLDQIKQAGLNPDDYAWYLDLRKYGSVPHAGFGLGLERFLTWITAEDHVRETIPFPRLLNR 429          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_DESRM (Asparaginyl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 71/188 (37.77%), Postives = 114/188 (60.64%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +L+    D+E + ++     I++L  +   PF R++YT           +G+ FE    WG D  + HE  ++E  F+ PV ++ YP  IKAFYM+ + +D + V   D++ P+  GE+IGG QR +   +++ R+E+  LP E +EWYLDLRR+G+V HSGFGLG ER + +   +D++R+ IP+PR
Sbjct:  249 VLERRRQDLELLGRD-----ISKLEAI-KLPFPRLSYTEAVELLK---SKGEAFE----WGEDFGAPHETIISE-NFESPVFIHRYPTEIKAFYMKPDPEDGRVVLGADLIAPEGYGEMIGGGQRIDDLQLLEQRLEEHKLPKEAFEWYLDLRRYGSVPHSGFGLGLERTVAWICKLDHVRETIPYPR 422          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CHLSY (Asparaginyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=asnS PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29
Identity = 75/188 (39.89%), Postives = 111/188 (59.04%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +L+   DD++ + +  D + + ++R     PF RITY            E +  +  + WG D  + HE  +   KF +PV V  +P  +KAFYM+ + +   VA   D+L P+  GE+IGGSQR     +++ RI + GL +E YEWYLDLRR+GTV HSGFG+G ER++ + TG  +IR+ IPFPR
Sbjct:  254 VLERRRDDLQTLER--DTTLLEQVR----PPFPRITYDEAIELIAAHQGEVEGAD-PLPWGEDFGAPHETLIAS-KFDRPVFVERFPSAVKAFYMQPDPERPEVALCADLLAPEGYGEIIGGSQRIHDPILLEQRIREHGLRIEDYEWYLDLRRYGTVPHSGFGMGIERVVAWITGTRHIRETIPFPR 433          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CHLAA (Asparaginyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=asnS PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29
Identity = 75/188 (39.89%), Postives = 111/188 (59.04%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +L+   DD++ + +  D + + ++R     PF RITY            E +  +  + WG D  + HE  +   KF +PV V  +P  +KAFYM+ + +   VA   D+L P+  GE+IGGSQR     +++ RI + GL +E YEWYLDLRR+GTV HSGFG+G ER++ + TG  +IR+ IPFPR
Sbjct:  254 VLERRRDDLQTLER--DTTLLEQVR----PPFPRITYDEAIELIAAHQGEVEGAD-PLPWGEDFGAPHETLIAS-KFDRPVFVERFPSAVKAFYMQPDPERPEVALCADLLAPEGYGEIIGGSQRIHDPILLEQRIREHGLRIEDYEWYLDLRRYGTVPHSGFGMGIERVVAWITGTRHIRETIPFPR 433          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACHD (Asparaginyl-tRNA synthetase OS=Bacillus halodurans GN=asnS PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN---DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L HC  +++ + +  D S +  ++     PF RI+Y              K F++ +EWG D  + HE  + E  F KPV + +YP  +K FYM  +   DD+  V   D++ P+  GE+IGGSQR   YD++K R+E+  L L+ Y WYLDLR++G+V HSGFGLG ER + + +G  ++R+ IPFPR   R
Sbjct:  249 VLKHCAIELKTLGR--DTSVLESIQ----APFPRISYDDAIKFLHE-----KGFDD-IEWGDDFGAPHETAIAE-HFDKPVFITHYPTSLKPFYMEPDPNRDDV--VLCADLIAPEGYGEIIGGSQRISDYDLLKKRLEEHDLSLDAYAWYLDLRKYGSVPHSGFGLGLERTVGWISGAGHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRSV (Asparaginyl-tRNA synthetase OS=Streptococcus sanguinis (strain SK36) GN=asnS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 67/168 (39.88%), Postives = 97/168 (57.74%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +  L+   + PF+R++Y            +       +E G D  S HE +++   F  P  V NYP  IKAFYM+ +  +   V   D+L P+  GE+IGGS REE YD + +++ D+G+    YE+YLDLR++GTV H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VELLKRYIAEPFKRVSYDEAIDLLQAHENDEDADYEHLEHGDDFGSPHETWISN-HFGVPTFVVNYPAAIKAFYMKPVPGNPDRVLCADLLAPEGYGEIIGGSMREEDYDALVAKMNDLGMDTTEYEFYLDLRKYGTVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CHLAD (Asparaginyl-tRNA synthetase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=asnS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +LD   +D++ + ++     I+ L  V   PF RITY            E +     + WG D  + HE  +   KF +PV V  +P  +KAFYM+ + +   VA   D+L P+  GE+IGGSQR    D+++ RI   GL LE Y+WYLDLRR+GTV HSGFG+G ER++ + TG  +IR+ IPFPR
Sbjct:  254 VLDRRREDLKVLERD-----ISLLEQVVP-PFPRITYDQAIELIAAHQGEVEG-AYPLPWGEDFGAPHETLIAS-KFDRPVFVERFPSAVKAFYMQPDPNRPEVALCADLLAPEGYGEIIGGSQRIHDPDLLEQRIRAHGLRLEDYQWYLDLRRYGTVPHSGFGMGIERVVAWITGTRHIRETIPFPR 433          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_OCEIH (Asparaginyl-tRNA synthetase OS=Oceanobacillus iheyensis GN=asnS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 70/184 (38.04%), Postives = 110/184 (59.78%), Query Frame = 3
Query:   33 MEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +E    + D S + +++     PF RI+Y            + K F++ +EWG D  + HE  + E  +  PV + NYPK IKAFYM+ + D   V    D++ P+  GE+IGGSQR +  ++++ R E+ GL    Y+WYL+LR++G+V HSGFGLG ER + + +G++++R+ IPFPR   R
Sbjct:  255 LELSVLDRDLSKLEKIK----APFPRISYDEAIDML-----KEKGFDD-IEWGEDFGAPHETAIAE-SYDMPVFITNYPKDIKAFYMKPHPDRSDVVLCADLIAPEGYGEIIGGSQRIDDLELMEQRYEEHGLTGPAYQWYLELRKYGSVPHSGFGLGLERTVAWLSGVEHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRTD (Asparaginyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=asnS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 65/168 (38.69%), Postives = 100/168 (59.52%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ L+   + PF+R++Y           K+       +E G D  S HE +++   F  P  V NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS RE+ YD + +++E++G+    YE+YLDLR++G+V H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VDLLKKYIAEPFKRVSYDEAIDLLQAHEKDEDTDYEHLEHGDDFGSPHETWISNY-FGVPTFVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMEELGMDRSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRT2 (Asparaginyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=asnS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.000e-28
Identity = 64/168 (38.10%), Postives = 99/168 (58.93%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ L+   + PF+R++Y            +       +E G D  S HE +++   F  P  V NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS RE+ YD + +++E++G+    YE+YLDLR++G+V H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VDLLKKYIAEPFKRVSYDEAIDLLQAHENDEDTDYEHLEHGDDFGSPHETWISNY-FGVPTFVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMEELGMDRSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN2_LACPL8.122e-3037.11Asparaginyl-tRNA synthetase 2 OS=Lactobacillus pla... [more]
SYN_DESRM1.061e-2937.77Asparaginyl-tRNA synthetase OS=Desulfotomaculum re... [more]
SYN_CHLSY1.809e-2939.89Asparaginyl-tRNA synthetase OS=Chloroflexus aurant... [more]
SYN_CHLAA1.809e-2939.89Asparaginyl-tRNA synthetase OS=Chloroflexus aurant... [more]
SYN_BACHD2.363e-2938.66Asparaginyl-tRNA synthetase OS=Bacillus halodurans... [more]
SYN_STRSV3.086e-2939.88Asparaginyl-tRNA synthetase OS=Streptococcus sangu... [more]
SYN_CHLAD3.086e-2940.96Asparaginyl-tRNA synthetase OS=Chloroflexus aggreg... [more]
SYN_OCEIH4.031e-2938.04Asparaginyl-tRNA synthetase OS=Oceanobacillus ihey... [more]
SYN_STRTD5.264e-2938.69Asparaginyl-tRNA synthetase OS=Streptococcus therm... [more]
SYN_STRT22.000e-2838.10Asparaginyl-tRNA synthetase OS=Streptococcus therm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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