FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PELTS (Asparaginyl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=asnS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.602e-28
Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            PF R++YT           +G  F+    WG D  + HE  ++E  F  PV ++ +P  IKAFYM+ + ++   V   D+L P+  GE+IGG QR +  +++K R+    LP E +EWYLDLRR+G+V HSGFGLG ER++ +  GI++IR+ IPFPR
Sbjct:  274 PFPRMSYTDAVDFLN---SKGVDFK----WGDDFGAPHETMISE-HFGLPVFIHRFPVDIKAFYMKPDPENPDVVLGADLLAPEGYGEIIGGGQRIDELELLKKRLVQHKLPEEAFEWYLDLRRYGSVPHSGFGLGLERLLAWICGIEHIREAIPFPR 423          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACA2 (Asparaginyl-tRNA synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=asnS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.928e-28
Identity = 68/192 (35.42%), Postives = 112/192 (58.33%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L+HC  ++  + +  D S + +++     PF RITY            + K F++ +EWG D  + HE  + E  + KPV + +YP  +K FYM+   D    V   D++ P+  GE+IGGS+R    D+++ R+++ GL  + Y+WY +LR++G+V HSGFGLG ER + + +G  ++R+ IPFPR   R
Sbjct:  249 VLEHCKIELNTLGR--DTSKLEQIK----APFPRITYDKAIEFL-----KEKGFDD-IEWGDDFGAPHETAIAE-SYDKPVFITHYPTSLKPFYMQPAKDRDDVVLCADLIAPEGYGEIIGGSERVHDMDLLEERLKEHGLDSDAYKWYAELRQYGSVPHSGFGLGLERTVAWISGAPHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRA5 (Asparaginyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 62/168 (36.90%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +  L+   + PF+R++Y            +       +E G D  S HE +++   F  P  V NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS RE+ YD + ++++++G+    Y++YLDLR++G+V H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VEALKRYIAEPFKRVSYDDAITLLQEHEADEDTDYEHLEHGDDFGSPHETWISNY-FGVPTFVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMDELGMDKSEYDFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRA3 (Asparaginyl-tRNA synthetase OS=Streptococcus agalactiae serotype III GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 62/168 (36.90%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +  L+   + PF+R++Y            +       +E G D  S HE +++   F  P  V NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS RE+ YD + ++++++G+    Y++YLDLR++G+V H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VEALKRYIAEPFKRVSYDDAITLLQEHEADEDTDYEHLEHGDDFGSPHETWISNY-FGVPTFVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMDELGMDKSEYDFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRA1 (Asparaginyl-tRNA synthetase OS=Streptococcus agalactiae serotype Ia GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 62/168 (36.90%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   69 INRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +  L+   + PF+R++Y            +       +E G D  S HE +++   F  P  V NYP   KAFYM+ +  + + V   D+L P+  GE+IGGS RE+ YD + ++++++G+    Y++YLDLR++G+V H GFG+G ERM+ F  G  +IR+ IPFPR
Sbjct:  275 VEALKRYIAEPFKRVSYDDAITLLQEHEADEDTDYEHLEHGDDFGSPHETWISNY-FGVPTFVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMDELGMDKSEYDFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAHJ (Asparaginyl-tRNA synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 72/192 (37.50%), Postives = 112/192 (58.33%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L +C   +E  A + D S + ++    S PF RI+Y           +EG    N +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R    ++++ RI++  L  E Y +YLDLRR+G+V HSGFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLKNC--QLELKALDRDTSKLEKV----SAPFPRISYDDAIKFLK---EEGF---NDIEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERINDLELLEQRIDEHQLDAESYNYYLDLRRYGSVPHSGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAW (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KSEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAT (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAS (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain MSSA476) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KSEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAR (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain MRSA252) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKMLERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_PELTS7.602e-2842.41Asparaginyl-tRNA synthetase OS=Pelotomaculum therm... [more]
SYN_BACA29.928e-2835.42Asparaginyl-tRNA synthetase OS=Bacillus amylolique... [more]
SYN_STRA51.297e-2736.90Asparaginyl-tRNA synthetase OS=Streptococcus agala... [more]
SYN_STRA31.297e-2736.90Asparaginyl-tRNA synthetase OS=Streptococcus agala... [more]
SYN_STRA11.297e-2736.90Asparaginyl-tRNA synthetase OS=Streptococcus agala... [more]
SYN_STAHJ1.297e-2737.50Asparaginyl-tRNA synthetase OS=Staphylococcus haem... [more]
SYN_STAAW1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAT1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAS1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAR1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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