FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAN (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain N315) GN=asnS PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAM (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=asnS PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAE (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain Newman) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAC (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain COL) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAAB (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAA9 (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain JH9) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAA8 (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAA3 (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAA2 (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain JH1) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
[Close]
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STAA1 (Asparaginyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 69/192 (35.94%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  +++ + ++  K     L  VA TPF RI+Y            + + F++ +EWG D  + HE  +    +  PV + NYP  IK FYM+ N ++ +TV   D++ P+  GE+IGGS+R +  ++++ R+++ GL  E Y +YLDLRR+G+V H GFGLG ER + + +G++++R+  PFPR   R
Sbjct:  249 VLENCKLELKILERDTSK-----LEKVA-TPFPRISYDDAIEFL-----KAEGFDD-IEWGEDFGAPHETAIAN-HYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNR 427
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_STAAN1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAM1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAE1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAC1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAAB1.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAA91.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAA81.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAA31.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAA21.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]
SYN_STAA11.297e-2735.94Asparaginyl-tRNA synthetase OS=Staphylococcus aure... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
back to top