FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_THET8 (Asparaginyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=asnS PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.693e-27
Identity = 68/165 (41.21%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L   A   + R+TY           +E       + +G D  + HE  L+  +F +PV V  YP  IKAFYM  + +D + V   D+L P+  GE+IGGSQR    ++++ +I++ GLP E Y+WYLDLRRFG+V HSGFGLG ER + +  G+ ++R+ IPFPR
Sbjct:  269 LEPAAEGHYPRLTYKEAVALVNRIAQEDPEVP-PLPYGEDFGAPHEAALSR-RFDRPVFVERYPARIKAFYMEPDPEDPELVLNDDLLAPEGYGEIIGGSQRIHDLELLRRKIQEFGLPEEVYDWYLDLRRFGSVPHSGFGLGLERTVAWICGLAHVREAIPFPR 431          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_THET2 (Asparaginyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=asnS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.693e-27
Identity = 68/165 (41.21%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            L   A   + R+TY           +E       + +G D  + HE  L+  +F +PV V  YP  IKAFYM  + +D + V   D+L P+  GE+IGGSQR    ++++ +I++ GLP E Y+WYLDLRRFG+V HSGFGLG ER + +  G+ ++R+ IPFPR
Sbjct:  269 LEPAAEGHYARLTYKEAVALVNRIAQEDPEVP-PLPYGEDFGAPHEAALSR-RFDRPVFVERYPARIKAFYMEPDPEDPELVLNDDLLAPEGYGEIIGGSQRIHDLELLRRKIQEFGLPEEVYDWYLDLRRFGSVPHSGFGLGLERTVAWICGLAHVREAIPFPR 431          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNM_YEAST (Asparaginyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=SLM5 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.212e-27
Identity = 67/159 (42.14%), Postives = 92/159 (57.86%), Query Frame = 3
Query:  102 FERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN---DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLE-PYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +  ITYT           E  HF+ + +WG  L +EHE++L    F+ PV V +YP+  K FYM+ N   DD  TV   D+LVP +GE+IGGS RE+ YD +   ++  G+      +WY+ LR+ G+  H GFGLGFER I +  G  NI+D IPF R
Sbjct:  328 WHNITYTNAIEILKKRHNEVSHFKYEPKWGQPLQTEHEKFLAGEYFKSPVFVTDYPRLCKPFYMKQNSTPDD--TVGCFDLLVPGMGEIIGGSLREDDYDKLCREMKARGMNRSGELDWYVSLRKEGSAPHGGFGLGFERFISYLYGNHNIKDAIPFYR 484          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_THEVO (Asparaginyl-tRNA synthetase OS=Thermoplasma volcanium GN=asnS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 68/188 (36.17%), Postives = 110/188 (58.51%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +++  +DD++ + +  D   +  ++     PF R+ Y+          K       ++++G DL ++ ER +T +++ KPV V NYPK +K FYM  + D+   V   D+L P+  GE+IGGSQR   Y  +  RI + GL    Y WY+DLR++G+V HSGFGLG +R+ ++   +DNIR+ IP+PR
Sbjct:  249 VIEENYDDLKLLGR--DPEALRAMK----PPFPRVKYSDII-------KVANEIGMQLKYGDDLGADEERQIT-MRYCKPVFVTNYPKELKPFYMPQDPDNPSEVLNHDLLAPEGYGEIIGGSQRIWDYKELMQRIREAGLDESAYYWYIDLRKYGSVPHSGFGLGMDRLAMWIMHLDNIREAIPYPR 422          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_STRMU (Asparaginyl-tRNA synthetase OS=Streptococcus mutans GN=asnS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   78 LRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            LR   + PF+R++Y           ++       +E G D  S HE +++   F  P  V NYP  +KAFYM+ +  +   V   D+L P+  GE+IGGS+RE  Y+ + ++I++ GL  + Y +YLDLR++G+V H GFGLG ERM+ F  G  +IR+ IPFPR
Sbjct:  278 LRKYIAQPFKRVSYDDAITLLQEHEEDEDTDYEHIEHGDDFGSPHETWISNY-FGIPTFVVNYPASLKAFYMKPVPGNPDRVLCADLLAPEGYGEIIGGSERETDYNTLLAKIKENGLNPDDYAFYLDLRQYGSVPHCGFGLGLERMVTFVAGTKHIREAIPFPR 441          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNM_SCHPO (Asparaginyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=slm5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 71/179 (39.66%), Postives = 105/179 (58.66%), Query Frame = 3
Query:   42 MAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGID-NIRDVIPFPRYPG 575
            M +NY +   ++L      P++ +TY+          K  K+     +WG DL+SEHE+YL E+  + PV V +YP+ IK FYM+ +    TVAA+D+LVP+VGEL GGS R++  D  K+   ++       +WYLDL ++    H GFGLG ER+I F  G + N+++ IPFPR  G
Sbjct:  274 MEQNYHRDHWDQLLK----PWKCMTYSEAIEELSAVKKTWKY---PPKWGNDLSSEHEKYLCEILHKTPVFVTDYPQKIKPFYMK-SSGPDTVAAVDLLVPQVGELAGGSLRKDHLDEYKTYPPEL-------QWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFPRSVG 437          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ROSCS (Asparaginyl-tRNA synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=asnS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.098e-26
Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            PF RITY            E +     +EWG DL + HE  +  + F +PV V  +P  IKAFYM  + +   VA   D+L P+  GE+IGGSQR     +++ RI + GL ++ Y WY+DLRR+G+V HSGFG+G ER   +  G  +IR+ IPFPR
Sbjct:  278 PFPRITYDEALRLIAERYAEVEGC-TPLEWGEDLGAPHETLIASM-FDRPVFVERFPSAIKAFYMEPDPNRPEVALCADLLAPEGYGEIIGGSQRIHDAALLERRIREYGLNVDDYRWYIDLRRYGSVPHSGFGMGIERATAWIGGTHHIRETIPFPR 433          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACSU (Asparaginyl-tRNA synthetase OS=Bacillus subtilis GN=asnS PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.098e-26
Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF RITY            + K F++ +EWG D  + HE  + E  + KPV +  YP  +K FYM+   D + V    D++ P+  GE+IGGS+R    ++++SR+++ GL  + Y+WY +LR++G+V HSGFGLG ER + + +G  ++R+ IPFPR   R
Sbjct:  273 PFPRITYDEAIEFL-----KEKGFDD-IEWGDDFGAPHETAIAE-HYDKPVFITRYPTSLKPFYMQPASDREDVVLCADLIAPEGYGEIIGGSERIHDMELLESRLKEHGLDSDAYKWYAELRKYGSVPHSGFGLGLERTVAWISGAPHVRETIPFPRLLNR 427          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ROSS1 (Asparaginyl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.434e-26
Identity = 66/158 (41.77%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            PF RITY            + +     +EWG DL + HE  +  + F +PV V  +P  IKAFYM  +     VA   D+L P+  GE+IGGSQR     +++ RI + GL ++ Y+WY+DLRR+G+V HSGFG+G ER   +  G  +IR+ IPFPR
Sbjct:  278 PFPRITYDEALKLIAERHADVEGC-TPLEWGEDLGAPHETLIASL-FDRPVFVERFPSAIKAFYMEPDPQRPEVALCADLLAPEGYGEIIGGSQRIHDPALLERRIREYGLNVDDYQWYIDLRRYGSVPHSGFGMGIERATAWIAGTHHIRETIPFPR 433          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACLD (Asparaginyl-tRNA synthetase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=asnS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.872e-26
Identity = 66/192 (34.38%), Postives = 113/192 (58.85%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +L++C  ++  + ++  K     L ++ + PF RITY            + K F++ +EWG D  + HE  + E  + KPV + +YP  +K FYM+   D + V    D++ P+  GE+IGGS+R    +++++R+++ GL  + Y+WY +LR++G+V HSGFGLG ER + +  G  ++R+ IPFPR   R
Sbjct:  249 VLENCKIELNTLGRDTSK-----LELIKA-PFPRITYDEAIQFL-----KEKGFDD-IEWGDDFGAPHETAIAE-SYDKPVFITHYPTSLKPFYMQPAPDREDVVLCADLIAPEGYGEIIGGSERIHDLELLEARLKEHGLESDAYQWYAELRKYGSVPHSGFGLGLERTVAWICGSPHVRETIPFPRLLNR 427          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_THET81.693e-2741.21Asparaginyl-tRNA synthetase OS=Thermus thermophilu... [more]
SYN_THET21.693e-2741.21Asparaginyl-tRNA synthetase OS=Thermus thermophilu... [more]
SYNM_YEAST2.212e-2742.14Asparaginyl-tRNA synthetase, mitochondrial OS=Sacc... [more]
SYN_THEVO4.927e-2736.17Asparaginyl-tRNA synthetase OS=Thermoplasma volcan... [more]
SYN_STRMU4.927e-2739.39Asparaginyl-tRNA synthetase OS=Streptococcus mutan... [more]
SYNM_SCHPO4.927e-2739.66Asparaginyl-tRNA synthetase, mitochondrial OS=Schi... [more]
SYN_ROSCS1.098e-2642.41Asparaginyl-tRNA synthetase OS=Roseiflexus castenh... [more]
SYN_BACSU1.098e-2638.89Asparaginyl-tRNA synthetase OS=Bacillus subtilis G... [more]
SYN_ROSS11.434e-2641.77Asparaginyl-tRNA synthetase OS=Roseiflexus sp. (st... [more]
SYN_BACLD1.872e-2634.38Asparaginyl-tRNA synthetase OS=Bacillus lichenifor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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