FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_THEAC (Asparaginyl-tRNA synthetase OS=Thermoplasma acidophilum GN=asnS PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 64/158 (40.51%), Postives = 96/158 (60.76%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            PF RI Y+          K        +++G DL ++ ER +T +K+ +P+ V NYPK +K FYM ++ ++   V   D+L P+  GE+IGGSQR   YD +  RI +  L    Y WY+DLR++G+V HSGFGLG +R+ ++   +DNIR+ IP+PR
Sbjct:  273 PFPRIRYSEII-------KVANSIGLPLKYGDDLGADEERQIT-MKYDRPIFVTNYPKDLKPFYMPVDPENPGEVLNHDMLAPEGYGEIIGGSQRIWNYDELMQRIREANLDESAYYWYVDLRKYGSVPHSGFGLGLDRLAMWIMHLDNIREAIPYPR 422          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SORC5 (Asparaginyl-tRNA synthetase OS=Sorangium cellulosum (strain So ce56) GN=asnS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.115e-26
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVE-----WGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPK-VGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF RI Y            E +    + E     WG D   E E  ++  ++ +PV+++ YP  +KAFYM+ +  D +    +DVL P+  GE+IGG QRE+    ++  IE   LP E + WYLDLRR+GT  H+GFGLG ER + +  G+ ++R+ IPFPR   R
Sbjct:  278 PFPRIRYDEAVAILNEARAEKRKMAGEAEIPDFPWGEDFGGEDETIISG-RYDRPVMIHRYPAQVKAFYMKRDPTDDRLALCVDVLAPEGYGEVIGGGQREDDLATLERAIEAHQLPPEAFGWYLDLRRYGTFPHAGFGLGVERSVAWICGLPHVRETIPFPRMLNR 443          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_BRUMA (Asparaginyl-tRNA synthetase, cytoplasmic OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 60/161 (37.27%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF R+ Y            E + F N   +G D+A   ER++T+    KP+++  +P  IKAFYM+ +    T+  ++D+L+P VGE++GGS R  ++D +    +++ +  +PY WYLD R +GT  H G+GLG ER I + T  ++IRDV  +PR+ GR
Sbjct:  387 PFLRMEYKDAIKWLQEHNVENE-FGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGR 545          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_CAEEL (Asparaginyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=nrs-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24
Identity = 62/161 (38.51%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF+R+ Y              +  E K  +G D+A   ER +T+     P+++  +P GIKAFYM R  DD +   ++D+L+P VGE++GGS R  + D + +  E  GL  + Y WY+D R++G+V H G+GLG ER I + T  ++IRDV  +PR+ GR
Sbjct:  384 PFKRMPYKEAIEWLQKNDVRNEMGE-KFVYGEDIAEAAERRMTDT-IGVPILLNRFPHGIKAFYMPRCADDNELTESVDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGGLDSKNYYWYMDQRKYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYPRFVGR 542          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_METKA (Aspartyl-tRNA synthetase OS=Methanopyrus kandleri GN=aspS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.305e-23
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   96 TPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            TPFERITY            E       VEWG DL +E ER L E+ F++P  +  +P+  + FY    DD +   A D++   + EL  G+QRE RYDV+  +IE+ GL  E +  YL+  ++G   H G+GLG ER ++  TG +NIR+V  FPR
Sbjct:  278 TPFERITYEETLDLLSEHGIE-------VEWGEDLPTEAERKLGEI-FEEPFFITEWPRETRPFYTMAKDD-EVTTAFDLMYQGL-ELASGAQREHRYDVLVRQIEEQGLSPEDFRHYLEAFKYGMPPHGGWGLGLERTLMTITGAENIREVTLFPR 424          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_ENCCU (Probable asparaginyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU09_1680 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.535e-20
Identity = 57/166 (34.34%), Postives = 89/166 (53.61%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQK-PVIVYNYPKGIKAFYMRLNDDLKTVA-AMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            V  TPF+RI Y+           + K      E G D+    ERYL EV     PV + ++  G K FYMR +++ K +  + D+L P +GE++GGS R++ Y+ +        + ++PY WYLD+ RFG  KH G+GLGFER ++     +++ +   +PR   R
Sbjct:  335 VPRTPFKRIKYSEAIELLKSKGYK-KEDNTDFELGDDIPDAAERYLVEVVGDGCPVFLTHFLVGHKPFYMRKDENDKGLTESTDLLFPGIGEILGGSMRQDTYEDLIEGFRRENINIDPYYWYLDMARFGPCKHGGYGLGFERFLMGLMRYESVDEATLYPRKVSR 499          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_DEBHA (Asparaginyl-tRNA synthetase, cytoplasmic OS=Debaryomyces hansenii GN=DED81 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF+R+ Y              +  E K ++G D+A   ER +T+     P+++  +P  IK+FYM +  DD +   ++DVL+P VGE+ GGS R    D + + I+  GL L+ Y W+ D R++GT  H G+GLG ER++ +      +RD   +PR+ GR
Sbjct:  391 PFKRMEYIHALDWLNEHGIPNEDGE-KFKFGDDIAEAAERKMTDT-IGVPILLIRFPVEIKSFYMQKCADDPRVTESVDVLMPTVGEITGGSMRTYDNDELVAAIKREGLDLDSYYWFTDQRKYGTCPHGGYGLGTERILAWLCDRFTVRDCSLYPRFTGR 549          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_YEAST (Asparaginyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=DED81 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.619e-20
Identity = 50/143 (34.97%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  153 KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +EG+ F+    +G D+A   ER +T+     P+ +  +P  IK+FYM R +DD +   ++DVL+P VGE+ GGS R +  D + +  +  G+  + Y W++D R++GT  H G+G+G ER++ +      +RD   +PR+ GR
Sbjct:  414 EEGEDFK----FGDDIAEAAERKMTDT-IGVPIFLTRFPVEIKSFYMKRCSDDPRVTESVDVLMPNVGEITGGSMRIDDMDELMAGFKREGIDTDAYYWFIDQRKYGTCPHGGYGIGTERILAWLCDRFTVRDCSLYPRFSGR 551          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_MACFA (Asparaginyl-tRNA synthetase, cytoplasmic OS=Macaca fascicularis GN=NARS PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXX--KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF+R+ Y+            KE   F    E+G D+    ER +T+    +P+++  +P  IK+FYM R  +D     ++DVL+P VGE++GGS R    + I +  +  G+   PY WY D R++GT  H G+GLG ER + +     +IRDV  +PR+  R
Sbjct:  397 PFKRMNYSDAIIWLKEHDIKKEDGTF---YEFGEDIPEAPERLMTDT-INEPILLCRFPVEIKSFYMQRCPEDSCLTESVDVLMPNVGEIVGGSMRTSDAEEILAGYKREGIDPAPYYWYTDQRKYGTCPHGGYGLGLERFLTWILNRYHIRDVCLYPRFVQR 555          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_HUMAN (Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   99 PFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            PF+R+ Y+           + K      E+G D+    ER +T+    +P+++  +P  IK+FYM R  +D +   ++DVL+P VGE++GGS R    + I +  +  G+   PY WY D R++GT  H G+GLG ER + +     +IRDV  +PR+  R
Sbjct:  387 PFKRMNYSDAIVWLKEHDVK-KEDGTFYEFGEDIPEAPERLMTDT-INEPILLCRFPVEIKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIFDSEEILAGYKREGIDPTPYYWYTDQRKYGTCPHGGYGLGLERFLTWILNRYHIRDVCLYPRFVQR 545          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_THEAC2.445e-2640.51Asparaginyl-tRNA synthetase OS=Thermoplasma acidop... [more]
SYN_SORC57.115e-2638.32Asparaginyl-tRNA synthetase OS=Sorangium cellulosu... [more]
SYNC_BRUMA3.531e-2537.27Asparaginyl-tRNA synthetase, cytoplasmic OS=Brugia... [more]
SYNC_CAEEL2.289e-2438.51Asparaginyl-tRNA synthetase, cytoplasmic OS=Caenor... [more]
SYD_METKA3.305e-2340.13Aspartyl-tRNA synthetase OS=Methanopyrus kandleri ... [more]
SYNC_ENCCU1.535e-2034.34Probable asparaginyl-tRNA synthetase, cytoplasmic ... [more]
SYNC_DEBHA2.005e-2034.78Asparaginyl-tRNA synthetase, cytoplasmic OS=Debary... [more]
SYNC_YEAST7.619e-2034.97Asparaginyl-tRNA synthetase, cytoplasmic OS=Saccha... [more]
SYNC_MACFA9.951e-2034.97Asparaginyl-tRNA synthetase, cytoplasmic OS=Macaca... [more]
SYNC_HUMAN9.951e-2034.16Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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