FC929277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12 Identity = 42/161 (26.09%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 + +GV DT A + +D L K I A E+F L + D R+++ LI G CK+ + A + + DVVTY + A C +G + +++ +M G P+ V + +M ++ + ++ + + +M E +PDA S ++ +L K Sbjct: 231 KSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSK 390
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12 Identity = 47/157 (29.94%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLN 507 ++ + + L + G I EA+ LF + D+ S++ ++DGL K+G++ A LF +P +++++N MI + ++D+A LF M + D ++NT++ G IRN E +K L RM E+NVI + ++ V+ +NE +LN Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPER----DFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVE-NKENEEALN 316
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 61 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFH--SLPRGVLIADVVTYNIMIHALCADG-----------KMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTL-SIVVDLLVKNEI 498 L + G++ EAL F ++ C+ D+ +Y+ +I+ LC+ G K A L LP D TY I+I + C G +M +A+ +F +M +G PD V +N L+ GC + N + +EL M + +P+ T S + V NEI Sbjct: 175 LGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEI 334 HSP 2 Score: 68.5514 bits (166), Expect = 5.647e-11 Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 28 DTWAYRTFIDGLCKNGYIVEALELFRTLRI--LKCELDIRSYSCLIDGLCKSG-----------RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE-RNVIPDASTLSIVVDLLVK 489 D +AY T I+ LC+ G +A L +++ + D +Y+ LI C+ G R+ A +F + + DVVTYN +I C ++ +A +LF DM+ KG P+ V +N+ + NE +E++ M + + +P +ST + ++ LV+ Sbjct: 199 DVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVE 366
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12 Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1 Query: 22 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 A D + Y ++ LC+ G A+++++ + K LD +S +ID L + G+ A LF DVV+Y + I L ++++A+ L DM+ G+ P+ + T++ G + ET KV ++L + V D +T V LL Sbjct: 416 ALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLL 569
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11 Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444 + + + K GY+ EA LF + E +I + + ++ G K R+ AW LF +P+ +VV++ +M+ ALC DG+ + A +LF +M + V V++NTL+ G IRN + K ++ M R+V+ Sbjct: 80 WTSLLSKYAKTGYLDEARVLFEVMP----ERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-----NVVSWTVMLTALCDDGRSEDAVELFDEMPERNV----VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV 201
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11 Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480 G+A D + Y T I CK G + EA ++F ++ D +Y+ L+D KS R K A ++ + + +VTYN +I A DG +D+A +L M KG PD + TL+ G R + + + M P+ T + + + Sbjct: 274 GIAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 300 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 452
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1 Query: 13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST-LSIVVDLLVKNEIS 501 +G D AY I LCK +EA LF + + + +Y+ +IDG CK G + + DV+TY +IH LCA G+ +A + +M+ K P+ + F L+ G + + + + M+E+ + PD++ LS+V L I+ Sbjct: 608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENIN 771
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453 The following BLAST results are available for this feature:
BLAST of FC929277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 137
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929277 ID=FC929277; Name=FC929277; organism=Citrus clementina; type=EST; length=892bpback to top |