FC929277

Overview
NameFC929277
Unique NameFC929277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 42/161 (26.09%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + +GV  DT A  + +D L K   I  A E+F  L     + D R+++ LI G CK+ +   A  +   +       DVVTY   + A C +G   + +++  +M   G  P+ V +  +M    ++ + ++ + +  +M E   +PDA   S ++ +L K
Sbjct:  231 KSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSK 390          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 47/157 (29.94%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLN 507
            ++ + +  L + G I EA+ LF  +       D+ S++ ++DGL K+G++  A  LF  +P      +++++N MI     + ++D+A  LF  M  +    D  ++NT++ G IRN E +K   L  RM E+NVI   + ++  V+   +NE +LN
Sbjct:  173 SWNSMVKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPER----DFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVE-NKENEEALN 316          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   61 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFH--SLPRGVLIADVVTYNIMIHALCADG-----------KMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTL-SIVVDLLVKNEI 498
            L + G++ EAL  F  ++   C+ D+ +Y+ +I+ LC+ G  K A  L     LP      D  TY I+I + C  G           +M +A+ +F +M  +G  PD V +N L+ GC + N   + +EL   M  +  +P+  T  S +    V NEI
Sbjct:  175 LGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEI 334          

HSP 2 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRI--LKCELDIRSYSCLIDGLCKSG-----------RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE-RNVIPDASTLSIVVDLLVK 489
            D +AY T I+ LC+ G   +A  L   +++   +   D  +Y+ LI   C+ G           R+  A  +F  +     + DVVTYN +I   C   ++ +A +LF DM+ KG  P+ V +N+ +      NE    +E++  M +  + +P +ST + ++  LV+
Sbjct:  199 DVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVE 366          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1
Query:   22 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            A D + Y  ++  LC+ G    A+++++ +   K  LD   +S +ID L + G+   A  LF          DVV+Y + I  L    ++++A+ L  DM+  G+ P+   + T++ G  +  ET KV ++L    +  V  D +T   V  LL
Sbjct:  416 ALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLL 569          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  301 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444
            + + +    K GY+ EA  LF  +     E +I + + ++ G  K  R+  AW LF  +P+     +VV++ +M+ ALC DG+ + A +LF +M  + V    V++NTL+ G IRN +  K  ++   M  R+V+
Sbjct:   80 WTSLLSKYAKTGYLDEARVLFEVMP----ERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-----NVVSWTVMLTALCDDGRSEDAVELFDEMPERNV----VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV 201          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480
            G+A D + Y T I   CK G +  EA ++F  ++      D  +Y+ L+D   KS R K A ++ + +        +VTYN +I A   DG +D+A +L   M  KG  PD   + TL+ G  R  +    + +   M      P+  T +  + +
Sbjct:  274 GIAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  300 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 452          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST-LSIVVDLLVKNEIS 501
            +G   D  AY   I  LCK    +EA  LF  +     +  + +Y+ +IDG CK G +         +       DV+TY  +IH LCA G+  +A   + +M+ K   P+ + F  L+ G  +   + + +     M+E+ + PD++  LS+V   L    I+
Sbjct:  608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENIN 771          
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  301 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453          
The following BLAST results are available for this feature:
BLAST of FC929277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
PP248_ARATH6.670e-1226.09Pentatricopeptide repeat-containing protein At3g22... [more]
PP185_ARATH6.670e-1229.94Pentatricopeptide repeat-containing protein At2g35... [more]
PP130_ARATH6.670e-1230.00Pentatricopeptide repeat-containing protein At1g77... [more]
PPR46_ARATH8.712e-1227.92Putative pentatricopeptide repeat-containing prote... [more]
PP293_ARATH8.712e-1226.14Pentatricopeptide repeat-containing protein At3g62... [more]
PPR69_ARATH1.138e-1131.11Pentatricopeptide repeat-containing protein At1g32... [more]
PP362_ARATH1.138e-1128.21Pentatricopeptide repeat-containing protein At5g02... [more]
PP382_ARATH1.486e-1126.14Pentatricopeptide repeat-containing protein At5g14... [more]
PP368_ARATH1.486e-1127.44Putative pentatricopeptide repeat-containing prote... [more]
PP294_ARATH1.486e-1126.14Pentatricopeptide repeat-containing protein At3g62... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DD06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929277 ID=FC929277; Name=FC929277; organism=Citrus clementina; type=EST; length=892bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCGATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCGCATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAATTCATGAGTTTTCCTTCTGTATCACATACTTCTCATTAGCTG
GAAGCGCAAATTTTTAGGCTTTTCCTGTATGGCCTCTTTTTCTGCTCTAA
TAAAATGGCATTTTATTTCCAAAAAAAAAAAAAAAAAAAAAA
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