FC929277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465 + GV D Y T I GL K G + EA +T+ E D +Y+ L++G+C+ G A L + + TYN ++H LC MDK +L+ M++ GV + + TL+ +++ + ++ E+ + + DAS S Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYS 444 HSP 2 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 G D + Y T + G C EA+ +++ ++ E D +Y+ LI GL K+GR++ A ++ D TY +++ +C G+ A L +MEA+G AP+ +NTL+ G + K +EL M V +++ + +V LVK+ Sbjct: 260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11 Identity = 46/158 (29.11%), Postives = 75/158 (47.47%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 G++A T + I L +G +EA LF LR + R+Y+ L+ G K+G LK A + + + + D TY+++I A G+ + A + +MEA V P+ F+ L+ G E K ++L M V PD ++V+D K Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11 Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471 ++ GV + Y ++ KNG + +A +LF +R E D+ Y+ LI C+ G +K A+ LF L L TY +I +C G+M A L +M++KGV V FNTL+ G R + + M+++ D T + + Sbjct: 286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTI 440
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP422_ARATH (Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11 Identity = 38/169 (22.49%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG----VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513 V ADT AY I G + A L + + + D+ +Y+ +I+G C +G++ AW L + + + + VTY+ ++ +C G M++A +L +ME + ++P+ V + ++ + + +L RM R +P+ T +++ +++N+ + ++ Sbjct: 161 VCADTVAYNLVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMPNRVTACVLIQGVLENDEDVKAL 329
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR31_ARATH (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 44/153 (28.76%), Postives = 72/153 (47.06%), Query Frame = 1 Query: 46 TFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISL 504 T + K G + EL L + Y L+DGL K+G+L+ A +F + + +D +IMI ALC + +A +L D E D V NT++ R E V+ ++ +MDE+ V PD +T I++ +K ++ L Sbjct: 312 TLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKEKLHL 464
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP421_ARATH (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 43/164 (26.22%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFH-SLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495 R G+ D Y + I G KN + L+LF + D+ SY+ L+ K GR A+++ H + L+ + TYNI++ ALC G D A +LF ++++ V P+ + +N L+ G ++ V ++ + + P+A T + ++ + K + Sbjct: 75 REAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTK 237 HSP 2 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALE-LFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 G++ D W+Y T + K G EA + L + + I +Y+ L+D LCKSG A ELF L V +++TYNI+I+ LC ++ + +++ G P+ V + T++ + K ++L +M + D VV L+K Sbjct: 113 GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSRVK-PELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIK 270
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 85 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510 E ++F + L E+D + LI GLC+SG L+ A +L P+ +V+T++ +I C GK ++A L ME + + PD + FN L+ G + + ++LL RM + P+ T V+ L+ + +L + Sbjct: 185 EIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326 HSP 2 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 36/137 (26.28%), Postives = 68/137 (49.64%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 426 GV D I GLC++G + AL+L K ++ ++S LI G C G+ + A++L + + + D +T+NI+I L G++++ DL M+ KG P+ + ++ G + + E++ +M Sbjct: 197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQM 333
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 39/148 (26.35%), Postives = 77/148 (52.03%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459 GV D ++Y ++D +CK+G +A++L++ ++ + +LD+ +Y+ +I + S ++ +F + +V T+N +I LC DG+M A+ + +M +G PD + + L R + S+++ L RM V P T Sbjct: 219 GVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLF---SRLEKPSEILSLFGRMIRSGVRPKMDT 363
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11 Identity = 36/147 (24.49%), Postives = 75/147 (51.02%), Query Frame = 1 Query: 40 YRTFIDGLCKN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477 Y +I+GL K G EA+++F+ ++ +C+ +Y+ +I+ K+ + ++W+L+ + ++ TY +++A +G +KA ++F ++ G+ PD +N LM R E+ M PD ++ +I+VD Sbjct: 231 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVD 377
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP342_ARATH (Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11 Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513 +RHGV D +Y T I KN + ++ + + +Y+ L+D K +++ + + + D TYNIMI+ G +D+ D+ +++ G+ PD ++NTL+ + V L+ M RN+IPD T + +V L +N+ L +I Sbjct: 726 KRHGVV-DVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAI 893 The following BLAST results are available for this feature:
BLAST of FC929277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 137
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929277 ID=FC929277; Name=FC929277; organism=Citrus clementina; type=EST; length=892bpback to top |