FC929277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11 Identity = 41/158 (25.95%), Postives = 75/158 (47.47%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480 R G+ D Y T + G EA +FRT+ D+ +YS L++ K RL+ +L + G + D+ +YN+++ A G + +A +F M+A G P+ ++ L+ ++ V +L M N PDA+T +I++++ Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEV 396
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 40/158 (25.32%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 + G + D + Y + L + AL L +R + E + ++ LIDGL ++G+L+ + DVV Y +MI + G+++KA ++F +M KG P+ +N+++ G + + LL M+ R P+ S +V+ L Sbjct: 285 KDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 43/152 (28.29%), Postives = 77/152 (50.66%), Query Frame = 1 Query: 28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 D + T ID K GY+ A +F + +I +++ L+ GL + LK A L + + + D +T+N + GK +KA D+ M+ KGVAP+ V++ + GC +N +++ +M E V P+A+T+S ++ +L Sbjct: 259 DVYVETTLIDMYIKTGYLPYARMVFDMMDAK----NIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKIL 406
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP196_ARATH (Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 AY I LCK G I +AL + + + L +Y ++ L + +++ AW + S+ + DV YN + + C DG+++ A ++ +E G +PD +++ L+LG R + + +L RM+E V ST + V+ LV+ Sbjct: 109 AYDILISRLCKLGRIDDALIVIGDMSNGRLGLTPSTYHPILCSLTRKYKIEEAWRVVESMRSKSVSMDVTAYNYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEEDGVTVLYSTHAHVITGLVE 259
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP391_ARATH (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 38/143 (26.57%), Postives = 72/143 (50.35%), Query Frame = 1 Query: 67 KNGYIVEALELFRTL-RILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 KNG++ +A+ELF + + L C+ + Y+ L+ LC A+ L + R L D TY I+++ C+ GKM +A + +M +G P + L+ G + E++ +M + +PD T +I+++ + K+ Sbjct: 158 KNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKS 300
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP318_ARATH (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 40/151 (26.49%), Postives = 77/151 (50.99%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 Y +D LCK GYI ALELF+ ++ + + ++ +Y+ LI+GLCKS R+ A + L + + VTY ++ ++ + LFL+M+ +G D A+ ++ I+ T + E + + + D + + +++L K+ Sbjct: 157 YNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKD 306
BLAST of FC929277 vs. ExPASy Swiss-Prot
Match: PP209_ARATH (Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 42/156 (26.92%), Postives = 72/156 (46.15%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474 + GV ++ I CK G EA ++ + + L R + LI LCK+ G + A E+ L + ++ +IH+LC + A L LDM +KG AP FN ++ C + + + E+L M+ R + PD T ++++ Sbjct: 294 KSGVLSEGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKNDGTITFAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVII 449 The following BLAST results are available for this feature:
BLAST of FC929277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 137
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929277 ID=FC929277; Name=FC929277; organism=Citrus clementina; type=EST; length=892bpback to top |