FC929304

Overview
NameFC929304
Unique NameFC929304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_HALMA (Aspartyl-tRNA synthetase OS=Haloarcula marismortui GN=aspS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 47/128 (36.72%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  186 WGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAA-MDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            WG DL++E E  L + +  +   + ++P  IK FY++ +DD + V+   D++ P + EL+ G QRE R+D +    E  GL  E +E+Y  + ++G   H+G+GLG ER+I+   G++NIR+ + FPR
Sbjct:  302 WGDDLSTEAEHVLGQ-EVGEHYFITDWPSEIKPFYIKDHDDDEEVSTGFDMMHPSM-ELVSGGQREHRFDHLVEGFEQQGLDPEAFEYYTKMFKYGMPPHAGWGLGGERLIMTMLGLENIREAVLFPR 427          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYDC_ENTBH (Probable aspartyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_21705 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  177 KVEWGIDLASEHERYLTEVKFQKPVI----VYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            ++++G D + EHER L ++   K  I    + +YP  I+AFY  +++  K   + D +V +  E++ G+QRE RYD +K+ + D GL  E  + YL+  ++G   H G G+G ER +    G D+IR    FPR P R
Sbjct:  335 QIDYGCDFSREHERILGKIIKDKEDIDIFTIIDYPSSIRAFYSYIDETTKLTRSYDFIV-RGEEILSGAQRENRYDYLKNAVIDKGLNPENLKNYLEAFKYGAPPHIGCGIGLERFLKAYFGFDDIRYFSLFPRDPNR 471          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_METBU (Aspartyl-tRNA synthetase OS=Methanococcoides burtonii (strain DSM 6242) GN=aspS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.836e-17
Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKP----VIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V  TPF ++ Y+          +E       VEWG DL +  E  + E  F++       + ++P  IK FY    +D   ++    ++ +  EL  G+QR   +D++K+RIE  GL  + +++YL   ++G   HSG+G+G ER+++    ++NIRD + FPR
Sbjct:  279 VPKTPFMKVPYSQAIDIVNAESEE------TVEWGGDLGTVAEHTIGEHVFKETGESHYFITDWPTEIKPFYAMPYEDNPLISKSFDMMHRTMELSSGAQRIHIHDMLKARIESQGLDSDGFDFYLRAFKYGMPPHSGWGIGCERLVMTMLSVENIRDTVLFPR 436          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_METBF (Aspartyl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=aspS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.836e-17
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V  TPF ++TY           +E      K+ WG DL +  E     Y+ E   +    + ++P  IK FY    +D    +    ++ +  EL  G+QR    D++KSRIE  GL  E +E+YL    +G   H+G+G+G ER I+   G +NIRD + FPR
Sbjct:  280 VPKTPFLKLTYNEVIEIINARSEE------KMHWGDDLGTFGEHIVGNYVYETTGESHYFIIDWPTEIKPFYAMPYEDRPEYSKSFDMMHRTMELSSGAQRIHIPDLLKSRIESQGLNPEGFEFYLKAFEYGMPPHAGWGMGCERFIMTMLGTENIRDTVLFPR 437          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_NATPD (Aspartyl-tRNA synthetase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=aspS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 53/184 (28.80%), Postives = 94/184 (51.09%), Query Frame = 3
Query:   15 DHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++C D +E +        I     V  TPF R++Y           +     + ++ WG DL +E E+ L +        + ++P  IK FY+  ++D +     D++ P++ EL+ G QRE R + + +  E  GL  E +E+Y  + ++G   H+G+GLG ER+++    +DNIR+ + FPR
Sbjct:  256 ENCTDQLEALG-------ITEEFEVPETPFPRLSYEEAIERINATGE----LDEQLVWGDDLPTEGEKALGD-DVGGHYFITDWPAEIKPFYIMDHEDGELSTGFDMMHPRM-ELVSGGQREHRREELIAGFEQQGLEPEAFEYYTKMFKYGMPPHAGWGLGGERLLMTMLDLDNIREAVLFPR 426          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYNC_SCHPO (Probable asparaginyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPBC1773.10c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.571e-16
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  183 EWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            ++G D+A   ER +T+ +  +P+ +  +P  IK+FYM R+ D  +   ++D L+P VGE++GGS R      + +  +  G+   PY W+ + R++GT +H G GLG ER + +      +R+   FPR+  R
Sbjct:  434 KFGDDIAEAAERKMTD-QINRPIFLTYFPLEIKSFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISDIQELLAAYKREGIDPAPYYWFTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTER 565          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_METAC (Aspartyl-tRNA synthetase OS=Methanosarcina acetivorans GN=aspS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLAS--EHE--RYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V  TPF ++TY                 E K+ WG DL +  EH    Y+ E   +    + ++P  IK FY    +D    +    ++ +  EL  G+QR    +++KSRIE  GL  + +E+YL    +G   H+G+G+G ER ++   G +NIRD + FPR
Sbjct:  280 VPKTPFLKLTYDEVIEIV------NSRCEEKMHWGDDLGTLGEHTVGNYVYETTGESHYFIIDWPTEIKPFYAMPYEDRPEFSKSFDMMHRTMELSSGAQRIHISELLKSRIESQGLNPDGFEFYLKAFEYGMPPHAGWGMGCERFVMTMLGTENIRDTVLFPR 437          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYNC_ENTBH (Probable asparaginyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_22533 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 47/166 (28.31%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   84 MVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQ-KPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +++   F++ITY            + K      + G D++   E++L E   + +P+ +  +P   K FY+    D       D+L P +GE++GGS RE  Y+ +    +   +  EPY WYLD+ +FG   H G+GLGFER+++      ++     + R P R
Sbjct:  293 VLSDKQFKKITYEDAIHFLIAQNHK-KTDNTDYQLGDDISDASEKFLLETYGENQPIFLIRFPTDHKPFYVA--KDQYGTQTCDLLFPGIGEIVGGSMRETNYNNLLDGFKRENIDHEPYSWYLDMAKFGPSPHGGYGLGFERLLMCLMKYKSVDQSTLYCRKPSR 455          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_METMA (Aspartyl-tRNA synthetase OS=Methanosarcina mazei GN=aspS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V  TPF ++TY                 E K+ WG DL +  E     ++ E   +    + ++P  IK FY    +D    +    ++ +  EL  G+QR     ++K+RIE  GL  + +E+YL    FG   H+G+G+G ER ++   G +NIRD + FPR
Sbjct:  280 VPKTPFLKLTYDEVIEII------NSRCEEKMHWGDDLGTLGEHTVGDHVYETTGESHYFIIDWPTEIKPFYAMPYEDRPEFSKSFDMMHRTMELSSGAQRIHIPSLLKNRIESQGLNPDGFEFYLKAFEFGMPPHAGWGMGCERFVMTMLGTENIRDTVLFPR 437          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_METMJ (Aspartyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=aspS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V S PF RI Y              K  E K+ +G DL+   ER + +   Q   IV ++P  I+ +Y M   D  +   A D++ P++ EL  G+QR   +D++  RI   GL  E +E+YL   R+G   H+G+GLG ER+++    + NIR+ + FPR
Sbjct:  270 VPSKPFPRIPYAEAIEIA------NKTIEEKLAFGDDLSPAAERAIGDTVGQHYFIV-DWPTDIRPYYAMPYPDRPEFCKAFDLMHPRM-ELSSGAQRIHDHDLLVERISAKGLSPESFEFYLKPFRYGMPPHAGWGLGIERLVMTMLDLPNIREAVLFPR 422          
The following BLAST results are available for this feature:
BLAST of FC929304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
SYD_HALMA2.325e-1736.72Aspartyl-tRNA synthetase OS=Haloarcula marismortui... [more]
SYDC_ENTBH3.037e-1735.51Probable aspartyl-tRNA synthetase, cytoplasmic OS=... [more]
SYD_METBU8.836e-1730.49Aspartyl-tRNA synthetase OS=Methanococcoides burto... [more]
SYD_METBF8.836e-1732.93Aspartyl-tRNA synthetase OS=Methanosarcina barkeri... [more]
SYD_NATPD1.507e-1628.80Aspartyl-tRNA synthetase OS=Natronomonas pharaonis... [more]
SYNC_SCHPO2.571e-1633.08Probable asparaginyl-tRNA synthetase, cytoplasmic ... [more]
SYD_METAC4.385e-1631.71Aspartyl-tRNA synthetase OS=Methanosarcina acetivo... [more]
SYNC_ENTBH1.666e-1528.31Probable asparaginyl-tRNA synthetase, cytoplasmic ... [more]
SYD_METMA4.848e-1530.49Aspartyl-tRNA synthetase OS=Methanosarcina mazei G... [more]
SYD_METMJ6.332e-1534.16Aspartyl-tRNA synthetase OS=Methanoculleus marisni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AH02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929304 ID=FC929304; Name=FC929304; organism=Citrus clementina; type=EST; length=749bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTT
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