FC929304

Overview
NameFC929304
Unique NameFC929304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_YERPE (Asparaginyl-tRNA synthetase OS=Yersinia pestis GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.145e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_YERPA (Asparaginyl-tRNA synthetase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.145e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_YERP3 (Asparaginyl-tRNA synthetase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.145e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_YERE8 (Asparaginyl-tRNA synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=asnS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.145e-59
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEQHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_BACV8 (Asparaginyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=asnS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59
Identity = 106/193 (54.92%), Postives = 139/193 (72.02%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W LD+C+DD++F+   +DK  I RL+ V    F R+ YT           +G  FE  V WG+DLASEHERYL E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  YD + +RI+++G+P++   WYLD R+FG+  HSGFGLGFER++LF TG+ NIRDVIPFPR P  A+
Sbjct:  274 WALDNCYDDVKFLNDMFDKGLIERLQGVLKEEFVRLPYTEGIKILEEAVVKGHKFEFPVYWGVDLASEHERYLVEEHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSEREADYDKLMTRIQELGIPMKDMWWYLDTRKFGSCPHSGFGLGFERLLLFVTGMTNIRDVIPFPRTPRNAE 466          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_SHEAM (Asparaginyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=asnS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.219e-58
Identity = 115/200 (57.50%), Postives = 140/200 (70.00%), Query Frame = 3
Query:    9 LLDHCF--------DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L +CF        DDM+F A+  D S I+RL+   S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  269 MLKYCFNAVLQERMDDMKFFAERVDGSVIDRLQSFVSSDFAQVDYTDAVEILQNC---GKTFEYPVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLEEMNLSKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVGNIRDVIPFPRAPRSAN 465          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_PARD8 (Asparaginyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=asnS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.219e-58
Identity = 107/193 (55.44%), Postives = 138/193 (71.50%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W LD+C +D++F+   +DK  I RL  V    F R+ YT           +G  FE  V WG+DLASEHER+L E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  YD + +RI+++G+P++   WYLD RRFGTV HSGFGLGFER++LF TG+ NIRDVIPFPR P  A+
Sbjct:  275 WALDNCMEDIKFLNDMFDKELIARLEGVLKDSFVRLPYTEGIKILEEAVAKGHKFEFPVYWGVDLASEHERFLVEDHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSEREADYDKLMTRIDELGIPMKDMWWYLDTRRFGTVPHSGFGLGFERLLLFVTGMANIRDVIPFPRTPNNAE 467          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_SHEON (Asparaginyl-tRNA synthetase OS=Shewanella oneidensis GN=asnS PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58
Identity = 111/192 (57.81%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KSGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_ERWCT (Asparaginyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=asnS PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM F A+  DK  + RL    S+ F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER   + SR+E+MGL  E Y WY DLRR+GT+ HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLNERADDMAFFAERVDKEAVTRLEKFVSSDFAQVDYTDAVEILLNC---GQQFENPVYWGVDLSSEHERYLAEQHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQREERLAALDSRLEEMGLNKEDYWWYRDLRRYGTIPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYN_BACTN (Asparaginyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=asnS PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58
Identity = 108/193 (55.96%), Postives = 137/193 (70.98%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W LD+C DD++F+   +DK  I RL+ V    F R+ YT           +G  FE  V WG+DLASEHERYL E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  Y+ + +RIE+M +P++   WYLD R+FGT  HSGFGLGFER++LF TG+ NIRDVIPFPR P  AD
Sbjct:  274 WALDNCADDVKFLNDMFDKGLIERLQGVLKDDFVRLPYTDGIKILEDAVAKGHKFEFPVYWGVDLASEHERYLVEEHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSEREADYNKLMTRIEEMHIPMKDMWWYLDTRKFGTCPHSGFGLGFERLLLFVTGMSNIRDVIPFPRTPRNAD 466          
The following BLAST results are available for this feature:
BLAST of FC929304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
SYN_YERPE7.145e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pestis GN=... [more]
SYN_YERPA7.145e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pestis bv.... [more]
SYN_YERP37.145e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia pseudotube... [more]
SYN_YERE87.145e-5957.59Asparaginyl-tRNA synthetase OS=Yersinia enterocoli... [more]
SYN_BACV89.332e-5954.92Asparaginyl-tRNA synthetase OS=Bacteroides vulgatu... [more]
SYN_SHEAM1.219e-5857.50Asparaginyl-tRNA synthetase OS=Shewanella amazonen... [more]
SYN_PARD81.219e-5855.44Asparaginyl-tRNA synthetase OS=Parabacteroides dis... [more]
SYN_SHEON1.592e-5857.81Asparaginyl-tRNA synthetase OS=Shewanella oneidens... [more]
SYN_ERWCT1.592e-5857.59Asparaginyl-tRNA synthetase OS=Erwinia carotovora ... [more]
SYN_BACTN1.592e-5855.96Asparaginyl-tRNA synthetase OS=Bacteroides thetaio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AH02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929304 ID=FC929304; Name=FC929304; organism=Citrus clementina; type=EST; length=749bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTT
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